V
Vitor C. Sousa
Researcher at University of Lisbon
Publications - 69
Citations - 4561
Vitor C. Sousa is an academic researcher from University of Lisbon. The author has contributed to research in topics: Population & Biology. The author has an hindex of 27, co-authored 56 publications receiving 3595 citations. Previous affiliations of Vitor C. Sousa include University of Bern & Rutgers University.
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Journal ArticleDOI
Robust demographic inference from genomic and SNP data.
Laurent Excoffier,Isabelle Dupanloup,Emilia Huerta-Sanchez,Vitor C. Sousa,Matthieu Foll,Matthieu Foll +5 more
TL;DR: A flexible and robust simulation-based framework to infer demographic parameters from the site frequency spectrum (SFS) computed on large genomic datasets and shows that it allows one to study evolutionary models of arbitrary complexity, which cannot be tackled by other current likelihood-based methods.
Journal ArticleDOI
A genomic history of Aboriginal Australia
Anna-Sapfo Malaspinas,Anna-Sapfo Malaspinas,Anna-Sapfo Malaspinas,Michael C. Westaway,Craig Muller,Vitor C. Sousa,Vitor C. Sousa,Oscar Lao,Isabel Alves,Isabel Alves,Isabel Alves,Anders Bergström,Georgios Athanasiadis,Jade Yu Cheng,Jade Yu Cheng,Jacob E. Crawford,Tim H. Heupink,Enrico Macholdt,Stephan Peischl,Stephan Peischl,Simon Rasmussen,Stephan Schiffels,Sankar Subramanian,Joanne L. Wright,Anders Albrechtsen,Chiara Barbieri,Isabelle Dupanloup,Isabelle Dupanloup,Anders Eriksson,Anders Eriksson,Ashot Margaryan,Ida Moltke,Irina Pugach,Thorfinn Sand Korneliussen,Ivan P. Levkivskyi,J. Víctor Moreno-Mayar,Shengyu Ni,Fernando Racimo,Martin Sikora,Yali Xue,Farhang Aghakhanian,Nicolas Brucato,Søren Brunak,Paula F. Campos,Paula F. Campos,Warren Clark,Sturla Ellingvåg,Gudjugudju Fourmile,Pascale Gerbault,Darren Injie,George Koki,Matthew Leavesley,Betty Logan,Aubrey Lynch,Elizabeth Matisoo-Smith,Peter McAllister,Alexander J. Mentzer,Mait Metspalu,Andrea Bamberg Migliano,Les Murgha,Maude E. Phipps,William Pomat,Doc Reynolds,François-Xavier Ricaut,Peter Siba,Mark G. Thomas,Thomas Wales,Colleen Ma Run Wall,Stephen Oppenheimer,Chris Tyler-Smith,Richard Durbin,Joe Dortch,Andrea Manica,Mikkel H. Schierup,Robert Foley,Robert Foley,Marta Mirazón Lahr,Marta Mirazón Lahr,Claire Bowern,Jeffrey D. Wall,Thomas Mailund,Mark Stoneking,Rasmus Nielsen,Rasmus Nielsen,Manjinder S. Sandhu,Laurent Excoffier,Laurent Excoffier,David M. Lambert,Eske Willerslev,Eske Willerslev,Eske Willerslev +90 more
TL;DR: A population expansion in northeast Australia during the Holocene epoch associated with limited gene flow from this region to the rest of Australia, consistent with the spread of the Pama–Nyungan languages is inferred.
Journal ArticleDOI
Understanding the origin of species with genome-scale data: modelling gene flow
Vitor C. Sousa,Jody Hey +1 more
TL;DR: Current data, models, methods and the potential pitfalls in using them will be considered here, especially with regard to including recombination in genetic models of the divergence process.
Journal ArticleDOI
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes.
Lounès Chikhi,Lounès Chikhi,Lounès Chikhi,Vitor C. Sousa,Vitor C. Sousa,Pierre Luisi,Pierre Luisi,Benoit Goossens,Benoit Goossens,Mark A. Beaumont +9 more
TL;DR: The results show that all three factors (genetic differentiation/gene flow, genetic diversity, and the sampling scheme) play a role in generating false bottleneck signals, and suggest an ad hoc method to counter this effect.
Journal ArticleDOI
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers
Martin Sikora,Andaine Seguin-Orlando,Vitor C. Sousa,Vitor C. Sousa,Vitor C. Sousa,Anders Albrechtsen,Thorfinn Sand Korneliussen,Amy Ko,Simon Rasmussen,Isabelle Dupanloup,Isabelle Dupanloup,Philip R. Nigst,Marjolein Bosch,Marjolein Bosch,Gabriel Renaud,Morten E. Allentoft,Ashot Margaryan,Ashot Margaryan,Sergey Vasilyev,Elizaveta Veselovskaya,Svetlana B. Borutskaya,Thibaut Devièse,Dan Comeskey,Thomas Higham,Andrea Manica,Robert Foley,Robert Foley,David J. Meltzer,David J. Meltzer,Rasmus Nielsen,Laurent Excoffier,Laurent Excoffier,Marta Mirazón Lahr,Marta Mirazón Lahr,Ludovic Orlando,Ludovic Orlando,Eske Willerslev,Eske Willerslev,Eske Willerslev +38 more
TL;DR: It is shown that individuals at Sunghir derive from a population of small effective size, with limited kinship and levels of inbreeding similar to HG populations, suggesting that Upper Paleolithic social organization was similar to that of living HGs, withlimited relatedness within residential groups embedded in a larger mating network.