The results of a single-crystal structure determination when in CIF format can now be validated routinely by automatic procedures. In this way, many errors in published papers can be avoided. The validation software generates a set of ALERTS detailing issues to be addressed by the experimenter, author, referee and publication journal. Validation was pioneered by the IUCr journal Acta Crystallographica Section C and is currently standard procedure for structures submitted for publication in all IUCr journals. The implementation of validation procedures by other journals is in progress. This paper describes the concepts of validation and the classes of checks that are carried out by the program PLATON as part of the IUCr checkCIF facility. PLATON validation can be run at any stage of the structure refinement, independent of the structure determination package used, and is recommended for use as a routine tool during or at least at the completion of every structure determination. Two examples are discussed where proper validation procedures could have avoided the publication of incorrect structures that had serious consequences for the chemistry involved.

/pdf/single-crystal-structure-validation-with-the-program-platon-2pdiuo25f2.pdf

Single-crystal structure validation with the program PLATON

Chemistry and biochemistry of 4-hydroxynonenal, malonaldehyde and related aldehydes.

https://pubs.rsc.org/en/content/articlepdf/2019/NP/C8NP00092A

Marine natural products.

Physiological and ecological constraints play key roles in the evolution of plant growth patterns, especially in relation to defenses against herbivores. Phenotypic and life history theories are unified within the growth-differentiation balance (GDB) framework, forming an integrated system of theories explaining and predicting patterns of plant defense and competitive interactions in ecological and evolutionary time. Plant activity at the cellular level can be classified as growth (cell division and enlargement) of differentiation (chemical and morphological changes leading to cell maturation and specialization). The GDB hypothesis of plant defense is premised upon a physiological trade-off between growth and differentiation processes. The trade-off between growth and defense exists because secondary metabolism and structural reinforcement are physiologically constrained in dividing and enlarging cells, and because they divert resources from the production of new leaf area. Hence the dilemma of plants: Th...

https://www.jstor.org/stable/pdfplus/2830650.pdf

The dilemma of plants: To grow or defend.

Advances in flavonoid research since 1992.

/pdf/lodopyridones-d-g-from-a-marine-derived-bacterium-2qa9q20t.pdf

Lodopyridones D - G from a marine-derived bacterium Saccharomonospora sp.

Penilumamide (I), a Novel Lumazine Peptide Isolated from the Marine-Derived Fungus, Penicillium sp. CNL-338.

3,7,11-Trimethyl-13-oxabicyclo[8.3.0]trideca-2,6-diene-12-spiro-2' -(5',5'-dimethyltetrahydrofuran), asperketal B, C20H30O2, M(r) = 302.46, orthorhombic, P2(1)2(1)2(1), a = 10.064(1), b = 22.214(2), c = 8.330 (1) A, V = 1862.3 A3, Z = 4, Dx = 1.08 g cm-3, Cu K alpha, lambda = 1.54178 A, mu = 4.55 cm-1, F(000) = 664, T = 294 (1) K, R = 0.031, wR = 0.027 for 953 data. The backbone of the molecule is composed of a cyclodecadiene ring which is cis fused to a bicyclic ketal system. The relative configurations at C(1), C(10), C(11) and C(12) are 1S*, 10R*, 11R* and 12R*.

Structure of asperketal B.

Marine natural products

After more than 20 years of leadership in the field of marine drug discovery, Sea Grant researchers are now demonstrating that marine organisms are an excellent source of new drugs. New treatments have been discovered for arthritis and cancer, and novel molecular probes have been commercialized that allow studies of previously unknown cellular processes. Through patenting and licensing, UC has begun to receive significant royalties for these discoveries. As this field matures, it has become clear that the world's oceans contain an enormous wealth of medical information that will continue to contribute to the discovery of new cures for human disease.

/pdf/sea-grant-seeks-new-drugs-from-the-sea-4zvwlzpq1h.pdf

William Fenical

Papers

Lodopyridones D - G from a marine-derived bacterium Saccharomonospora sp.

Penilumamide (I), a Novel Lumazine Peptide Isolated from the Marine-Derived Fungus, Penicillium sp. CNL-338.

Structure of asperketal B.

Marine natural products

Sea Grant seeks new drugs from the sea