Y
Yao Shen
Researcher at Columbia University
Publications - 15
Citations - 4485
Yao Shen is an academic researcher from Columbia University. The author has contributed to research in topics: Signal transduction & Medicine. The author has an hindex of 6, co-authored 13 publications receiving 3650 citations. Previous affiliations of Yao Shen include University of Notre Dame.
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Journal ArticleDOI
Selective inhibition of BET bromodomains.
Panagis Filippakopoulos,Jun Qi,Sarah Picaud,Yao Shen,William B. Smith,Oleg Fedorov,Elizabeth M. Morse,T. Keates,Tyler T. Hickman,I. Felletar,Martin Philpott,Shonagh Munro,Michael R. McKeown,Yuchuan Wang,Amanda L. Christie,Nathan West,Michael J. Cameron,Brian E. Schwartz,Tom D. Heightman,Nicholas B. La Thangue,Christopher A. French,Olaf Wiest,Andrew L. Kung,Stefan Knapp,Stefan Knapp,James E. Bradner +25 more
TL;DR: A cell-permeable small molecule (JQ1) that binds competitively to acetyl-lysine recognition motifs, or bromodomains is reported, establishing proof-of-concept for targeting protein–protein interactions of epigenetic ‘readers’, and providing a versatile chemical scaffold for the development of chemical probes more broadly throughout the b romodomain family.
Journal ArticleDOI
Functional characterization of somatic mutations in cancer using network-based inference of protein activity
Mariano J. Alvarez,Yao Shen,Federico M. Giorgi,Alexander Lachmann,B. Belinda Ding,B. Hilda Ye,Andrea Califano +6 more
TL;DR: A fraction of tumors is identified with aberrant activity of druggable oncoproteins despite a lack of mutations, and vice versa, and in vitro assays confirmed that VIPER-inferred protein activity outperformed mutational analysis in predicting sensitivity to targeted inhibitors.
Journal ArticleDOI
A community computational challenge to predict the activity of pairs of compounds
Mukesh Bansal,Mukesh Bansal,Jichen Yang,Charles Karan,Michael P. Menden,James C. Costello,James C. Costello,Hao Tang,Guanghua Xiao,Yajuan Li,Jeffrey Allen,Rui Zhong,Beibei Chen,Min Kim,Tao Wang,Laura M. Heiser,Ronald Realubit,Michela Mattioli,Mariano J. Alvarez,Yao Shen,Daniel Gallahan,Dinah S. Singer,Julio Saez-Rodriguez,Yang Xie,Gustavo Stolovitzky,Andrea Califano +25 more
TL;DR: Although the accuracy of predictions was not optimal, it is found that computational prediction of compound-pair activity is possible, and that community challenges can be useful to advance the field of in silico compound-synergy prediction.
Journal ArticleDOI
Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression
Brygida Bisikirska,Mukesh Bansal,Yao Shen,Julie Teruya-Feldstein,Raju S.K. Chaganti,Andrea Califano +5 more
TL;DR: Findings indicate that MR analysis is a valuable method for identifying bona fide contributors to follicular lymphoma transformation and may therefore guide the selection of compounds to be used in combinatorial treatment strategies.
Journal ArticleDOI
Systematic, network-based characterization of therapeutic target inhibitors.
Yao Shen,Mariano J. Alvarez,Brygida Bisikirska,Alexander Lachmann,Ronald Realubit,Sergey Pampou,Jorida Coku,Charles Karan,Andrea Califano +8 more
TL;DR: In vitro and in vivo validation confirmed that OncoLead analysis can recapitulate known inhibitors as well as prioritize novel, context-specific inhibitors of difficult targets, such as MYC and STAT3, and it was used to generate the first unbiased drug/regulator interaction map.