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Biodiversity and ecosystem function in soil

TLDR
The combination of taxonomic diversity and rapid carbon flux makes the soil ecosystem highly resistant to perturbation through either changing soil structure or removing selected groups of organisms.
Abstract
Summary 1. Soils are one of the last great frontiers for biodiversity research and are home to an extraordinary range of microbial and animal groups. Biological activities in soils drive many of the key ecosystem processes that govern the global system, especially in the cycling of elements such as carbon, nitrogen and phosphorus. 2. We cannot currently make firm statements about the scale of biodiversity in soils, or about the roles played by soil organisms in the transformations of organic materials that underlie those cycles. The recent UK Soil Biodiversity Programme (SBP) has brought a unique concentration of researchers to bear on a single soil in Scotland, and has generated a large amount of data concerning biodiversity, carbon flux and resilience in the soil ecosystem. 3. One of the key discoveries of the SBP was the extreme diversity of small organisms: researchers in the programme identified over 100 species of bacteria, 350 protozoa, 140 nematodes and 24 distinct types of arbuscular mycorrhizal fungi. Statistical analysis of these results suggests a much greater ‘hidden diversity’. In contrast, there was no unusual richness in other organisms, such as higher fungi, mites, collembola and annelids. 4. Stable-isotope ( 13 C) technology was used to measure carbon fluxes and map the path of carbon through the food web. A novel finding was the rapidity with which carbon moves through the soil biota, revealing an extraordinarily dynamic soil ecosystem. 5. The combination of taxonomic diversity and rapid carbon flux makes the soil ecosystem highly resistant to perturbation through either changing soil structure or removing selected groups of organisms.

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Soil organic matter turnover is governed by accessibility not recalcitrance

TL;DR: In this article, the authors explore how advances in quantitative analytical techniques have redefined the new understanding of SOM dynamics and how this is affecting the development and application of new modelling approaches to soil C.
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Ant biodiversity and its relationship to ecosystem functioning: a review

TL;DR: The role of ants in ecosystems is discussed in this article, mainly from the perspective of the effects of ground-dwelling ants on soil processes and function, emphasizing their role as ecosystem engineers.
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Functional Molecular Ecological Networks

TL;DR: A random matrix theory (RMT)-based conceptual framework for identifying functional molecular ecological networks was developed with the high-throughput functional gene array hybridization data of soil microbial communities in a long-term grassland FACE (free air, CO2 enrichment) experiment, suggesting that eCO2 dramatically altered the network interactions among different microbial functional genes/populations.
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GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes

TL;DR: This is the first comprehensive microarray currently available for studying biogeochemical processes and functional activities of microbial communities important to human health, agriculture, energy, global climate change, ecosystem management, and environmental cleanup and restoration.
Journal ArticleDOI

Transfer of heavy metals through terrestrial food webs: a review

TL;DR: This review gathers studies of the community-level effects of heavy metal pollution, including heavy metal transfer from soils to plants, microbes, invertebrates, and to both small and large mammals (including humans).
References
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Journal ArticleDOI

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

TL;DR: Computer-simulated analysis of terminal restriction fragment length polymorphisms (T-RFLP) for 1,002 eubacterial sequences showed that with proper selection of PCR primers and restriction enzymes, 686 sequences could be PCR amplified and classified into 233 unique terminal restriction fragments lengths or "ribotypes."
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High diversity in DNA of soil bacteria.

TL;DR: The results show that the major part of DNA isolated from the bacterial fraction of soil is very heterogeneous, with a C0t1/2 value corresponding to about 4,000 completely different genomes of standard soil bacteria.
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Stable-isotope probing as a tool in microbial ecology

TL;DR: Stable-isotope probing offers a powerful new technique for identifying microorganisms that are actively involved in specific metabolic processes under conditions which approach those occurring in situ.
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Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors

TL;DR: There are probably millions of species in the microorganismal domains Bacteria and Archaea (the prokaryotes), and the authors are only just beginning to work out the basic principles governing their distribution and abundance in natural environments.
Journal ArticleDOI

Estimating prokaryotic diversity and its limits

TL;DR: It is evident that local and global prokaryotic diversity can be understood through species abundance curves and purely experimental approaches to solving this conundrum will be fruitless.
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What are the effect of biodiversity in soil nutrient cycling?

The effect of biodiversity in soil nutrient cycling is not mentioned in the provided information.