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Journal ArticleDOI

Chloroplast DNA variation in European white oaks phylogeography and patterns of diversity based on data from over 2600 populations

TLDR
In this paper, a consortium of 16 laboratories have studied chloroplast DNA (cpDNA) variation in European white oaks, including Quercus robur, petraea, pubescens, Q. frainetto, faginea, pyrenaica, and macranthera.
About
This article is published in Forest Ecology and Management.The article was published on 2002-02-01. It has received 451 citations till now. The article focuses on the topics: Quercus pubescens & Quercus canariensis.

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Choosing and Using a Plant DNA Barcode

TL;DR: The process of selecting and refining a plant barcode is reviewed; the factors which influence the discriminatory power of the approach are evaluated; some early applications of plant barcoding are described and summarise major emerging projects; and outline tool development that will be necessary for plant DNA barcode to advance.
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Phylogeographic insights into cryptic glacial refugia.

TL;DR: Many of the insights into the glacial histories of species in cryptic refugia gained through phylogeographic approaches are summarised.
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Comparative phylogeography of unglaciated eastern North America.

TL;DR: Modelling analyses indicate no clear spatial patterning and support the hypothesis that phylogeographical structure in diverse temperate taxa is complex and was not shaped by just a few barriers.
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Molecular evidence for glacial refugia of mountain plants in the European Alps.

TL;DR: A comparison of the phylogeographic patterns with geological and palaeoenvironmental data demonstrates that glacial refugia were located along the southwestern, southern, eastern and northern border of the Alps, which implies that evolutionary or biogeographic processes induced by climatic fluctuations act on gene and species diversity in a similar way.
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African cichlid fish: a model system in adaptive radiation research

TL;DR: The evidence suggests that speciation rate declines through time as niches get filled up during adaptive radiation, but the data suggest that the propensity to radiate within lakes is a derived property that evolved during the evolutionary history of some African cichlids, and does not coincide with the appearance of proposed key innovations in morphology and life history.
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PHYLIP-Phylogeny inference package (Version 3.2)

J. Felsenstein
- 01 Jan 1989 - 
Journal ArticleDOI

Universal primers for amplification of three non-coding regions of chloroplast DNA

TL;DR: Six primers for the amplification of three non-coding regions of chloroplast DNA via the polymerase chain reaction (PCR) have been designed and worked for most species tested, which means that they may be used to study the population biology and evolution of plants.
Journal ArticleDOI

A set of universal primers for amplification of polymorphic non‐coding regions of mitochondrial and chloroplast DNA in plants

TL;DR: The genetic information present in the plant mitochondrial DNA and chloroplast DNA is of great interest in phylogeny and in population genetics, largely because of the non-mendelian mode of inheritance of these genomes.
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Measuring and testing genetic differentiation with ordered versus unordered alleles.

TL;DR: Two measures of differentiation can be compared for a single data set: one (GST) that makes use only of the allelic frequencies and the other (NST) for which similarities between the haplotypes are taken into account in addition.
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