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Diffeomorphic demons: efficient non-parametric image registration.

TLDR
An efficient non-parametric diffeomorphic image registration algorithm based on Thirion's demons algorithm that provides results that are similar to the ones from the demons algorithm but with transformations that are much smoother and closer to the gold standard, available in controlled experiments, in terms of Jacobians.
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This article is published in NeuroImage.The article was published on 2009-03-01 and is currently open access. It has received 1432 citations till now. The article focuses on the topics: Image registration.

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Citations
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A reproducible evaluation of ANTs similarity metric performance in brain image registration.

TL;DR: This is the first study to use a consistent transformation framework to provide a reproducible evaluation of the isolated effect of the similarity metric on optimal template construction and brain labeling, and to quantify the similarity of templates derived from different subgroups.
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elastix : A Toolbox for Intensity-Based Medical Image Registration

TL;DR: The software consists of a collection of algorithms that are commonly used to solve medical image registration problems, and allows the user to quickly configure, test, and compare different registration methods for a specific application.
Journal ArticleDOI

Deep Learning in Medical Image Analysis

TL;DR: This review covers computer-assisted analysis of images in the field of medical imaging and introduces the fundamentals of deep learning methods and their successes in image registration, detection of anatomical and cellular structures, tissue segmentation, computer-aided disease diagnosis and prognosis, and so on.
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Deformable Medical Image Registration: A Survey

TL;DR: This paper attempts to give an overview of deformable registration methods, putting emphasis on the most recent advances in the domain, and provides an extensive account of registration techniques in a systematic manner.
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VoxelMorph: A Learning Framework for Deformable Medical Image Registration

TL;DR: VoxelMorph promises to speed up medical image analysis and processing pipelines while facilitating novel directions in learning-based registration and its applications and demonstrates that the unsupervised model’s accuracy is comparable to the state-of-the-art methods while operating orders of magnitude faster.
References
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Journal ArticleDOI

A fast diffeomorphic image registration algorithm

TL;DR: DARTEL has been applied to intersubject registration of 471 whole brain images, and the resulting deformations were evaluated in terms of how well they encode the shape information necessary to separate male and female subjects and to predict the ages of the subjects.
Book

Differential Geometry, Lie Groups, and Symmetric Spaces

TL;DR: In this article, the structure of semisimplepleasure Lie groups and Lie algebras is studied. But the classification of simple Lie algesbras and of symmetric spaces is left open.
Journal ArticleDOI

Performance of optical flow techniques

TL;DR: These comparisons are primarily empirical, and concentrate on the accuracy, reliability, and density of the velocity measurements; they show that performance can differ significantly among the techniques the authors implemented.
Journal ArticleDOI

Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

TL;DR: This study indicates that SyN, with cross-correlation, is a reliable method for normalizing and making anatomical measurements in volumetric MRI of patients and at-risk elderly individuals.
Journal ArticleDOI

Image matching as a diffusion process: an analogy with Maxwell's demons

TL;DR: The main idea is to consider the objects boundaries in one image as semi-permeable membranes and to let the other image, considered as a deformable grid model, diffuse through these interfaces, by the action of effectors situated within the membranes.
Related Papers (5)
Frequently Asked Questions (13)
Q1. What contributions have the authors mentioned in the paper "Diffeomorphic demons: efficient non-parametric image registration" ?

The authors propose an efficient non-parametric diffeomorphic image registration algorithm based on Thirion ’ s demons algorithm. In the first part of this paper, the authors show that Thirion ’ s demons algorithm can be seen as an optimization procedure on the entire space of displacement fields. The authors provide strong theoretical roots to the different variants of Thirion ’ s demons algorithm. The authors show on controlled experiments that this advantage is confirmed in practice and yields a faster convergence. In the second part of this paper, the authors adapt the optimization procedure underlying the demons algorithm to a space of diffeomorphic transformations. 

Nevertheless, the framework the authors proposed showed to be versatile enough to be extended to many types of images such as DTI ( Yeo et al., 2008c ), Cortical surfaces ( Yeo et al., 2008b ) or 4D time series of cardiac images ( Peyrat et al., 2008 ). 

Thanks to their open-source implementation of the diffeomorphic demons algorithm (Vercauteren et al., 2007b), their registration scheme has also been tested by an independent group, cf. (Urschler et al., 2007). 

With the development of computational anatomy and in the absence of a justified physical model of inter-subject variability, statistics on diffeomorphisms also become an important topic (Arsigny et al., 2006; Lepore et al., 2008; Vaillant et al., 2004; Xue et al., 2006). 

Thanks to the open-source implementation of their diffeomorphic demons the authors proposed in (Vercauteren et al., 2007b), their algorithm has been successfully tested by several independent groups. 

One of the most interesting conclusions of these derivations was to show that the symmetric forces could be linked to the efficient second-order minimization (ESM) framework. 

The authors have seen that the parameterization of diffeomorphic transformations through a stationary speed vector field presented in (Arsigny et al., 2006), provides a very efficient framework for dealing with diffeomorphisms. 

Since the emphasis is on the comparison of the various schemes and not on the final performance, no multi-resolution scheme was used. 

As a first test to evaluate the usefulness of the diffeomorphic demons with respect to the additive demons, the authors have used the classical “Circle to C” registration problem. 

Using this property in a recursive manner, this yields the following efficient algorithm for the computation of vector fields exponentials:Algorithm 3 (Fast Vector Field Exponentials) • Choose N such that 2−Nu is close enough to 0, e.g. maxp ∥ ∥2−Nu(p) ∥ ∥ ≤ 0.5• Perform an explicit first order integration: v(p)← 2−Nu(p) for all pixels. 

Since the composition and inversion of B-spline transformations cannot be expressed on a B-spline basis, the advantage of using a parametric approach is not clear in this case. 

One of the main limitations of both the additive and compositive demons algorithm is that it does not ensure the invertibility of the output transformations contrarily to diffeomorphic image registration algorithms. 

When using a single parameterization in the Lie algebra, it might therefore be useful to investigate the image of the exponential map.