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Entropy and dynamics of water in hydration layers of a bilayer.

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TLDR
The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface, supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water.
Abstract
We compute the entropy and transport properties of water in the hydration layer of dipalmitoylphosphatidylcholine bilayer by using a recently developed theoretical scheme [two-phase thermodynamic model, termed as 2PT method; S.-T. Lin et al., J. Chem. Phys. 119, 11792 (2003)] based on the translational and rotational velocity autocorrelation functions and their power spectra. The weights of translational and rotational power spectra shift from higher to lower frequency as one goes from the bilayer interface to the bulk. Water molecules near the bilayer head groups have substantially lower entropy (48.36 J/mol/K) than water molecules in the intermediate region (51.36 J/mol/K), which have again lower entropy than the molecules (60.52 J/mol/K) in bulk. Thus, the entropic contribution to the free energy change (TΔS) of transferring an interface water molecule to the bulk is 3.65 kJ/mol and of transferring intermediate water to the bulk is 2.75 kJ/mol at 300 K, which is to be compared with 6.03 kJ/mol for melting of ice at 273 K. The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface. This behavior is supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water. The ratio of reorientational relaxation time for Legendre polynomials of order 1 and 2 is approximately 2 for interface, intermediate, and bulk water, indicating the presence of jump dynamics in these water molecules.

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Journal ArticleDOI

Dynamic coupling of a hydration layer to a fluid phospholipid membrane: intermittency and multiple time-scale relaxations

TL;DR: Spatially resolved interface water dynamics can act as a sensitive reflector of regional membrane dynamics occurring at sub ps to hundreds of ps time-scales for several important biological functions at physiological temperature in the future.
Journal ArticleDOI

Atomistic characterization of collective protein–water–membrane dynamics

TL;DR: Correlated vibrational motion on the sub-picosecond timescale and associated collective dynamics in a protein-membrane environment are characterized using molecular dynamics simulations and correlated vibrations persist up to distances of 25 Å between both biomolecular surfaces.
Dissertation

Sélection et intégration d'une souche probiotique fonctionnelle dans une matrice sèche

TL;DR: In this paper, the authors developpe des tests de criblage en cytometrie en flux, permettant de determiner l'aptitude d'une bacterie a etre sechee and l'origine de sa sensibilite.

Development of High Performance Molecular Dynamics with Application to Multimillion-Atom Biomass Simulations

Roland Schulz
TL;DR: The simulation presented primarily, explains the temperature-dependent structure and dynamics of individual softwood, and the reaction-field method has been shown to give accurate results for lignocellulose systems, as well as good computational efficiency on leadership class supercomputers.
Journal ArticleDOI

Analyzing the driving forces of insulin stability in the basic amino acid solutions: A perspective from hydration dynamics.

TL;DR: In this article, extensive atomistic molecular dynamics simulations were performed to investigate the hydration properties of aqueous solutions of concentrated arginine, histidine, and lysine and their comparative efficiency on regulating the conformational stability of the insulin monomer.
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