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Journal ArticleDOI

Entropy and dynamics of water in hydration layers of a bilayer.

TLDR
The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface, supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water.
Abstract
We compute the entropy and transport properties of water in the hydration layer of dipalmitoylphosphatidylcholine bilayer by using a recently developed theoretical scheme [two-phase thermodynamic model, termed as 2PT method; S.-T. Lin et al., J. Chem. Phys. 119, 11792 (2003)] based on the translational and rotational velocity autocorrelation functions and their power spectra. The weights of translational and rotational power spectra shift from higher to lower frequency as one goes from the bilayer interface to the bulk. Water molecules near the bilayer head groups have substantially lower entropy (48.36 J/mol/K) than water molecules in the intermediate region (51.36 J/mol/K), which have again lower entropy than the molecules (60.52 J/mol/K) in bulk. Thus, the entropic contribution to the free energy change (TΔS) of transferring an interface water molecule to the bulk is 3.65 kJ/mol and of transferring intermediate water to the bulk is 2.75 kJ/mol at 300 K, which is to be compared with 6.03 kJ/mol for melting of ice at 273 K. The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface. This behavior is supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water. The ratio of reorientational relaxation time for Legendre polynomials of order 1 and 2 is approximately 2 for interface, intermediate, and bulk water, indicating the presence of jump dynamics in these water molecules.

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Journal ArticleDOI

Atomistic Simulations of Pore Formation and Closure in Lipid Bilayers

TL;DR: By using atomistic computer simulations, this work is able to determine not only the free energy for pore formation, but also the enthalpy and entropy, which yields what is believed to be significant new insights in the molecular driving forces behind membrane defects.
Journal ArticleDOI

Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

TL;DR: The detailed characterization obtained here provides insight at atomic detail into processes relevant to biomass pretreatment for cellulosic ethanol production and general polymer coil-globule transition phenomena.
Journal ArticleDOI

Aqueous Solutions at the Interface with Phospholipid Bilayers

TL;DR: The interaction of pure water, and also of aqueous ionic solutions, with model membranes is described, showing that a symbiosis of experimental and computational work over the past few years has resulted in substantial progress in the field.
Journal ArticleDOI

Critical update on 2-methacryloyloxyethyl phosphorylcholine (MPC) polymer science

TL;DR: This review focuses on three topics that highlight the latest findings on MPC polymers, that is, specific recognition of C-reactive protein (CRP), cell-membrane-penetration abilities, and lubrication properties.
Journal ArticleDOI

Thermodynamics of Water Entry in Hydrophobic Channels of Carbon Nanotubes

TL;DR: The recently developed two phase thermodynamics method is used to compute translational and rotational entropies of confined water molecules inside single-walled carbon nanotubes and shows that the increase in energy of a water molecule inside the nanotube is compensated by the gain in its rotational entropy.
References
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Journal ArticleDOI

Rotational motion of square planar copper complexes in solution and phospholipid bilayer membranes

TL;DR: In this paper, the ESR spectra of 3-ethoxy-2-oxobutyraldehydebis (N, N-dimethylthiosemicarbazonato) and copper(II) tetraphenylporphyrin (CuTPP), in paraffin oil at various temperatures, as well as in oriented dimyristoylphosphatidylcholine bilayer membranes, at 25 °C, were simulated using the stochastic Liouville equation formalism and a postconvolution method.
Journal ArticleDOI

Inhomogeneity effects on the structure and dynamics of water at the surface of a membrane: a computer simulation study.

TL;DR: The structural and dynamical properties of water interacting with the surface of a lipid bilayer are reported, which show different dynamical regimes of water: a region of strong water-solute interaction, a transition region, and the bulk water region.
Journal ArticleDOI

Reorientation of water inside carbon nanorings by large angular jumps.

TL;DR: Simulation of orientational dynamics of water molecules confined inside narrow carbon nanorings reveal that reorientational relaxation is mediated by large amplitude angular jumps, and has a slowly decaying exponential tail with a timescale of about 440 fs.
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