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Journal ArticleDOI

Entropy and dynamics of water in hydration layers of a bilayer.

TLDR
The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface, supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water.
Abstract
We compute the entropy and transport properties of water in the hydration layer of dipalmitoylphosphatidylcholine bilayer by using a recently developed theoretical scheme [two-phase thermodynamic model, termed as 2PT method; S.-T. Lin et al., J. Chem. Phys. 119, 11792 (2003)] based on the translational and rotational velocity autocorrelation functions and their power spectra. The weights of translational and rotational power spectra shift from higher to lower frequency as one goes from the bilayer interface to the bulk. Water molecules near the bilayer head groups have substantially lower entropy (48.36 J/mol/K) than water molecules in the intermediate region (51.36 J/mol/K), which have again lower entropy than the molecules (60.52 J/mol/K) in bulk. Thus, the entropic contribution to the free energy change (TΔS) of transferring an interface water molecule to the bulk is 3.65 kJ/mol and of transferring intermediate water to the bulk is 2.75 kJ/mol at 300 K, which is to be compared with 6.03 kJ/mol for melting of ice at 273 K. The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface. This behavior is supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water. The ratio of reorientational relaxation time for Legendre polynomials of order 1 and 2 is approximately 2 for interface, intermediate, and bulk water, indicating the presence of jump dynamics in these water molecules.

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Atomistic Simulations of Pore Formation and Closure in Lipid Bilayers

TL;DR: By using atomistic computer simulations, this work is able to determine not only the free energy for pore formation, but also the enthalpy and entropy, which yields what is believed to be significant new insights in the molecular driving forces behind membrane defects.
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Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

TL;DR: The detailed characterization obtained here provides insight at atomic detail into processes relevant to biomass pretreatment for cellulosic ethanol production and general polymer coil-globule transition phenomena.
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Aqueous Solutions at the Interface with Phospholipid Bilayers

TL;DR: The interaction of pure water, and also of aqueous ionic solutions, with model membranes is described, showing that a symbiosis of experimental and computational work over the past few years has resulted in substantial progress in the field.
Journal ArticleDOI

Critical update on 2-methacryloyloxyethyl phosphorylcholine (MPC) polymer science

TL;DR: This review focuses on three topics that highlight the latest findings on MPC polymers, that is, specific recognition of C-reactive protein (CRP), cell-membrane-penetration abilities, and lubrication properties.
Journal ArticleDOI

Thermodynamics of Water Entry in Hydrophobic Channels of Carbon Nanotubes

TL;DR: The recently developed two phase thermodynamics method is used to compute translational and rotational entropies of confined water molecules inside single-walled carbon nanotubes and shows that the increase in energy of a water molecule inside the nanotube is compensated by the gain in its rotational entropy.
References
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Journal ArticleDOI

Calculations of Hydration Entropies of Hydrophobic, Polar, and Ionic Solutes in the Framework of the Langevin Dipoles Solvation Model

TL;DR: A Langevin dipoles solvation model that can determine the entropies of transfer of molecules from the gas phase to aqueous solution is developed and examined in this article, where the authors calculate the hydrophobic part of the hydration entropy using the potential-dependent surface area of the solute.
Journal ArticleDOI

Do more strongly hydrogen-bonded water molecules reorient more slowly ?

TL;DR: In this article, the authors studied how water reorientation dynamics' short and long-time contributions depend on the hydrogen(H)-bond strength and showed quantitatively that the stronger the H-bond, the smaller the cone angle and librational re orientation amplitude.
Journal ArticleDOI

Water dynamics at the interface in AOT reverse micelles.

TL;DR: A two-component model is developed that simultaneously describes the population relaxation and orientational dynamics of the OD stretch in the spectral region of the interfacial water and demonstrates that water interacting with the interface has slower vibrational relaxation andorientational dynamics.
Journal ArticleDOI

Logarithmic decay of the orientational correlation function in supercooled liquids on the Ps to Ns time scale

TL;DR: In this article, the authors studied the dynamics of supercooled ortho-terphenyl, salol, benzophenone, 2-biphenylmethanol, and dibutylphthalate over a broad range of time, <1 ps to tens of ns.
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