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Journal ArticleDOI

Entropy and dynamics of water in hydration layers of a bilayer.

TLDR
The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface, supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water.
Abstract
We compute the entropy and transport properties of water in the hydration layer of dipalmitoylphosphatidylcholine bilayer by using a recently developed theoretical scheme [two-phase thermodynamic model, termed as 2PT method; S.-T. Lin et al., J. Chem. Phys. 119, 11792 (2003)] based on the translational and rotational velocity autocorrelation functions and their power spectra. The weights of translational and rotational power spectra shift from higher to lower frequency as one goes from the bilayer interface to the bulk. Water molecules near the bilayer head groups have substantially lower entropy (48.36 J/mol/K) than water molecules in the intermediate region (51.36 J/mol/K), which have again lower entropy than the molecules (60.52 J/mol/K) in bulk. Thus, the entropic contribution to the free energy change (TΔS) of transferring an interface water molecule to the bulk is 3.65 kJ/mol and of transferring intermediate water to the bulk is 2.75 kJ/mol at 300 K, which is to be compared with 6.03 kJ/mol for melting of ice at 273 K. The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface. This behavior is supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water. The ratio of reorientational relaxation time for Legendre polynomials of order 1 and 2 is approximately 2 for interface, intermediate, and bulk water, indicating the presence of jump dynamics in these water molecules.

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Atomistic Simulations of Pore Formation and Closure in Lipid Bilayers

TL;DR: By using atomistic computer simulations, this work is able to determine not only the free energy for pore formation, but also the enthalpy and entropy, which yields what is believed to be significant new insights in the molecular driving forces behind membrane defects.
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Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

TL;DR: The detailed characterization obtained here provides insight at atomic detail into processes relevant to biomass pretreatment for cellulosic ethanol production and general polymer coil-globule transition phenomena.
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Aqueous Solutions at the Interface with Phospholipid Bilayers

TL;DR: The interaction of pure water, and also of aqueous ionic solutions, with model membranes is described, showing that a symbiosis of experimental and computational work over the past few years has resulted in substantial progress in the field.
Journal ArticleDOI

Critical update on 2-methacryloyloxyethyl phosphorylcholine (MPC) polymer science

TL;DR: This review focuses on three topics that highlight the latest findings on MPC polymers, that is, specific recognition of C-reactive protein (CRP), cell-membrane-penetration abilities, and lubrication properties.
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Thermodynamics of Water Entry in Hydrophobic Channels of Carbon Nanotubes

TL;DR: The recently developed two phase thermodynamics method is used to compute translational and rotational entropies of confined water molecules inside single-walled carbon nanotubes and shows that the increase in energy of a water molecule inside the nanotube is compensated by the gain in its rotational entropy.
References
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Journal ArticleDOI

Ultrafast Raman-induced Kerr-effect of water: Single molecule versus collective motions

TL;DR: In this paper, a detailed comparison with THz time domain spectroscopy demonstrates that the reorientational dynamics responsible for the long time tail of the Kerr response are due to single molecule as opposed to collective effects.
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Dynamics and thermodynamics of water in PAMAM dendrimers at subnanosecond time scales.

TL;DR: Atomistic molecular dynamics simulations used to study generation 5 polyamidoamine (PAMAM) dendrimers immersed in a bath of water show that translational and rotational dynamics of water are affected by the PAMAM-water interactions as well as due to the confinement in the interior of thedendrimer.
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Water at the surfaces of aligned phospholipid multibilayer model membranes probed with ultrafast vibrational spectroscopy.

TL;DR: The population decays suggest the existence of two major types of water molecules in the interfacial region of the lipid bilayers, and the agreement of the magnitudes of the two components obtained from IR spectra with those from vibrational lifetime measurements further supports the two-component model.
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Ultrafast Dynamics in Reverse Micelles

TL;DR: This review explores recent studies utilizing a variety of ultrafast laser techniques to uncover details about structure and dynamics in various RMs, showing that confinement is an important factor determining the impact of the reverse micellar environment on the chemistry.
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Relation between rotational and translational dynamic heterogeneities in water

TL;DR: This work uses molecular dynamics simulations to probe the rotational dynamics of the extended simple point charge model of water for a range of temperatures down to 200 K, 6 K above the mode coupling temperature and finds thatrotational dynamics is spatially heterogeneous.
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