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Open AccessJournal ArticleDOI

Entry Exclusion of Conjugative Plasmids of the IncA, IncC, and Related Untyped Incompatibility Groups.

TLDR
The role of entry exclusion in the apparent incompatibility between IncA and IncC plasmids is unraveled while shedding light on the importance of the TraG subunit substitution used by SGI1 to evade entry exclusion.
Abstract
Conjugative plasmids of incompatibility group C (IncC), formerly known as A/C 2 , disseminate antibiotic resistance genes globally in diverse pathogenic species of Gammaproteobacteria. Salmonella genomic island 1 (SGI1) can be mobilized by IncC plasmids and was recently shown to reshape the conjugative type IV secretion system (T4SS) encoded by these plasmids to evade entry exclusion. Entry exclusion blocks DNA translocation between cells containing identical or highly similar plasmids. Here, we report that the protein encoded by the entry exclusion gene of IncC plasmids ( eexC ) mediates entry exclusion in recipient cells through recognition of the IncC-encoded TraG C protein in donor cells. Phylogenetic analyses based on EexC and TraG C homologs predicted the existence of at least three different exclusion groups among IncC-related conjugative plasmids. Mating assays using Eex proteins encoded by representative IncC and IncA (former A/C 1 ) and related untyped plasmids confirmed these predictions and showed that the IncC and IncA plasmids belong to the C exclusion group, thereby explaining their apparent incompatibility despite their compatible replicons. Representatives of the two other exclusion groups (D and E) are untyped conjugative plasmids found in Aeromonas sp. Finally, we determined through domain swapping that the carboxyl terminus of the EexC and EexE proteins controls the specificity of these exclusion groups. Together, these results unravel the role of entry exclusion in the apparent incompatibility between IncA and IncC plasmids while shedding light on the importance of the TraG subunit substitution used by SGI1 to evade entry exclusion. IMPORTANCE IncA and IncC conjugative plasmids drive antibiotic resistance dissemination among several pathogenic species of Gammaproteobacteria due to the diversity of drug resistance genes that they carry and their ability to mobilize antibiotic resistance-conferring genomic islands such as SGI1 of Salmonella enterica. While historically grouped as “IncA/C,” IncA and IncC replicons were recently confirmed to be compatible and to abolish each other’s entry into the cell in which they reside during conjugative transfer. The significance of our study is in identifying an entry exclusion system that is shared by IncA and IncC plasmids. It impedes DNA transfer to recipient cells bearing a plasmid of either incompatibility group. The entry exclusion protein of this system is unrelated to any other known entry exclusion proteins.

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Journal ArticleDOI

Plasmid Transfer by Conjugation in Gram-Negative Bacteria: From the Cellular to the Community Level.

TL;DR: The key steps of plasmid transfer by conjugation in Gram-negative bacteria are reviewed, by following the life cycle of the F factor during its transfer from the donor to the recipient cell.
Journal ArticleDOI

Transferable Plasmids of Salmonella enterica Associated With Antibiotic Resistance Genes.

TL;DR: This review will cover the most common plasmid incompatibility groups present in S. enterica with a focus on the transfer mechanisms and associated antibiotic resistance genes.
Journal ArticleDOI

IncC conjugative plasmids and SXT/R391 elements repair double-strand breaks caused by CRISPR-Cas during conjugation.

TL;DR: It is shown that IncC conjugative plasmids are highly resilient to host defence systems during entry into a new host by conjugation, and a conserved operon containing five genes that confer a novel host defence evasion (hde) phenotype considerably broadens the host range of large families of mobile elements spreading multidrug resistance.
Journal ArticleDOI

Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB.

TL;DR: One previously unknown gene, acaB, encodes a transcriptional regulator that has a crucial role in the regulation of IncC conjugation, and is solved at 2.9-Å resolution and used to guide functional analyses that reveal how AcaB binds to DNA.
Journal ArticleDOI

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world.

TL;DR: A canthamoeba -infecting Mimiviridae is isolated, highlighting a unique example of intricate commensalism in the viral world, where the transpoviron uses the virophage to propagate and where the Zamilon viroPHage and the transPoviron depend on the giant virus to replicate, without affecting its infectious cycle.
References
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TL;DR: MUSCLE is a new computer program for creating multiple alignments of protein sequences that includes fast distance estimation using kmer counting, progressive alignment using a new profile function the authors call the log-expectation score, and refinement using tree-dependent restricted partitioning.
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Journal ArticleDOI

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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Journal ArticleDOI

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

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Journal ArticleDOI

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