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Evaluation of consensus methods in predictive species distribution modelling

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TLDR
In this article, the authors tested the predictive accuracies of five consensus methods, namely Weighted Average (WA), Mean(All), Median(All, Median(PCA), and Best, for 28 threatened plant species.
Abstract
Aim Spatial modelling techniques are increasingly used in species distribution modelling. However, the implemented techniques differ in their modelling performance, and some consensus methods are needed to reduce the uncertainty of predictions. In this study, we tested the predictive accuracies of five consensus methods, namely Weighted Average (WA), Mean(All), Median(All), Median(PCA), and Best, for 28 threatened plant species. Location  North-eastern Finland, Europe. Methods  The spatial distributions of the plant species were forecasted using eight state-of-the-art single-modelling techniques providing an ensemble of predictions. The probability values of occurrence were then combined using five consensus algorithms. The predictive accuracies of the single-model and consensus methods were assessed by computing the area under the curve (AUC) of the receiver-operating characteristic plot. Results  The mean AUC values varied between 0.697 (classification tree analysis) and 0.813 (random forest) for the single-models, and from 0.757 to 0.850 for the consensus methods. WA and Mean(All) consensus methods provided significantly more robust predictions than all the single-models and the other consensus methods. Main conclusions  Consensus methods based on average function algorithms may increase significantly the accuracy of species distribution forecasts, and thus they show considerable promise for different conservation biological and biogeographical applications.

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Citations
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The art of modelling range-shifting species

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BIOMOD – a platform for ensemble forecasting of species distributions

TL;DR: BIOMOD as mentioned in this paper is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships, including the ability to model species distributions with several techniques, test models with a wide range of approaches, project species distributions into different environmental conditions (e.g. climate or land use change scenarios) and dispersal functions.
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Selecting pseudo-absences for species distribution models: how, where and how many?

TL;DR: In this article, the authors conducted a comprehensive comparative analysis based on simple simulated species distributions to propose guidelines on how, where and how many pseudo-absences should be generated to build reliable species distribution models.
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Uses and misuses of bioclimatic envelope modeling

TL;DR: Critics of bioclimatic envelope models are reviewed to suggest that criticism has often been misplaced, resulting from confusion between what the models actually deliver and what users wish that they would express.
References
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Journal ArticleDOI

Random Forests

TL;DR: Internal estimates monitor error, strength, and correlation and these are used to show the response to increasing the number of features used in the forest, and are also applicable to regression.
Book

Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach

TL;DR: The second edition of this book is unique in that it focuses on methods for making formal statistical inference from all the models in an a priori set (Multi-Model Inference).
Journal ArticleDOI

Measuring the accuracy of diagnostic systems

John A. Swets
- 03 Jun 1988 - 
TL;DR: For diagnostic systems used to distinguish between two classes of events, analysis in terms of the "relative operating characteristic" of signal detection theory provides a precise and valid measure of diagnostic accuracy.
Journal ArticleDOI

Predictive habitat distribution models in ecology

TL;DR: A review of predictive habitat distribution modeling is presented, which shows that a wide array of models has been developed to cover aspects as diverse as biogeography, conservation biology, climate change research, and habitat or species management.
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