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Finding community structure in very large networks.

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TLDR
A hierarchical agglomeration algorithm for detecting community structure which is faster than many competing algorithms: its running time on a network with n vertices and m edges is O (md log n) where d is the depth of the dendrogram describing the community structure.
Abstract
The discovery and analysis of community structure in networks is a topic of considerable recent interest within the physics community, but most methods proposed so far are unsuitable for very large networks because of their computational cost. Here we present a hierarchical agglomeration algorithm for detecting community structure which is faster than many competing algorithms: its running time on a network with n vertices and m edges is O (md log n) where d is the depth of the dendrogram describing the community structure. Many real-world networks are sparse and hierarchical, with m approximately n and d approximately log n, in which case our algorithm runs in essentially linear time, O (n log(2) n). As an example of the application of this algorithm we use it to analyze a network of items for sale on the web site of a large on-line retailer, items in the network being linked if they are frequently purchased by the same buyer. The network has more than 400 000 vertices and 2 x 10(6) edges. We show that our algorithm can extract meaningful communities from this network, revealing large-scale patterns present in the purchasing habits of customers.

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Citations
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Journal ArticleDOI

Fast unfolding of communities in large networks

TL;DR: This work proposes a heuristic method that is shown to outperform all other known community detection methods in terms of computation time and the quality of the communities detected is very good, as measured by the so-called modularity.
Journal ArticleDOI

Fast unfolding of communities in large networks

TL;DR: In this paper, the authors proposed a simple method to extract the community structure of large networks based on modularity optimization, which is shown to outperform all other known community detection methods in terms of computation time.
Journal ArticleDOI

Modularity and community structure in networks

TL;DR: In this article, the modularity of a network is expressed in terms of the eigenvectors of a characteristic matrix for the network, which is then used for community detection.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of community structure, or clustering, is attempted, from the definition of the main elements of the problem, to the presentation of most methods developed, with a special focus on techniques designed by statistical physicists.
References
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Journal ArticleDOI

Metabolic stability and epigenesis in randomly constructed genetic nets

TL;DR: The hypothesis that contemporary organisms are also randomly constructed molecular automata is examined by modeling the gene as a binary (on-off) device and studying the behavior of large, randomly constructed nets of these binary “genes”.
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Diameter of the World-Wide Web

TL;DR: The World-Wide Web becomes a large directed graph whose vertices are documents and whose edges are links that point from one document to another, which determines the web's connectivity and consequently how effectively the authors can locate information on it.
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A comprehensive two-hybrid analysis to explore the yeast protein interactome

TL;DR: The comprehensive analysis using a system to examine two-hybrid interactions in all possible combinations between the budding yeast Saccharomyces cerevisiae is completed and would significantly expand and improve the protein interaction map for the exploration of genome functions that eventually leads to thorough understanding of the cell as a molecular system.
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Evolution of networks

TL;DR: The recent rapid progress in the statistical physics of evolving networks is reviewed, and how growing networks self-organize into scale-free structures is discussed, and the role of the mechanism of preferential linking is investigated.
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