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Molecular phylogenetics and biogeography of galaxiid fishes (Osteichthyes: Galaxiidae): dispersal, vicariance, and the position of Lepidogalaxias salamandroides.

TLDR
The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships, and the loss of this migratory phase may be a major cause of speciation.
Abstract
The galaxiid fishes exhibit a gondwanan distribution. We use mitochondrial DNA sequences to test conflicting vicariant and dispersal biogeographic hypotheses regarding the Southern Hemisphere range of this freshwater group. Although phylogenetic resolution of cytochrome b and 16S rRNA sequences is largely limited to more recent divergences, our data indicate that the radiation can be interpreted as several relatively recent dispersal events superimposed on an ancient gondwanan radiation. Genetic relationships contradict the findings of recent morphological analyses of galaxioid fishes. In particular, we examine several hypotheses regarding phylogenetic placement of the enigmatic Lepidogalaxias. Although most workers consider Lepidogalaxias to be an unusual scaled member of the Southern Hemisphere galaxioids, it has also been suggested that this species is related to the Northern Hemisphere esocoids. Our data strongly suggest that this species is not a galaxiid, and the alternative hypothesized esocoid relationship cannot be rejected. The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships. Juvenile saltwater-tolerance is phylogenetically distributed throughout the Galaxiinae, and the loss of this migratory phase may be a major cause of speciation.

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Phylogenetic relationships in a small group of diminutive galaxiid fishes and the evolution of sexual dimorphism

TL;DR: Analysis of diverse morphological characters supports combined monophyly of the diminutive galaxiid genera Brachygalaxias and Galaxiella, both of which are monophyletic.
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The lasting biological signature of Pliocene tectonics: Reviewing the re-routing of Australia’s largest river drainage system

TL;DR: The authors synthesize recently published geological and freshwater phylogeographic data to elucidate the evolutionary history of south-eastern Australia's major river drainages and their biotas and highlight the persisting evolutionary effects of a major Pliocene drainage rearrangement.
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Molecular insights into the biogeography and species status of new zealand's endemic latrodectus spider species; l. katipo and l. atritus (araneae, theridiidae)

TL;DR: Low pairwise distances between L. hasselti and the New Zealand widow fauna indicated that L. katipo and L. atritus were not present in New Zealand before the fragmentation of Gondwana, suggesting the current taxonomic distinction between the two species may be invalid.
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Genetic divergence and relationships among smelts of the genus Osmerus from the Russian waters

TL;DR: The dendrograms constructed using the data of RFLP analysis of mtDNA, along with the sequencing data of mitochondrial and nuclear genes were congruent and the representatives of O. eperlanus and O. m.
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Within-river genetic connectivity patterns reflect contrasting geomorphology

TL;DR: To test the hypothesis that geomorphological features, shaped by underlying geology, can influence within‐river connectivity patterns in freshwater‐limited fishes, a large number of fishes are studied.
References
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Journal ArticleDOI

Clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

TL;DR: The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved and modifications are incorporated into a new program, CLUSTAL W, which is freely available.
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Confidence limits on phylogenies: an approach using the bootstrap.

TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

TL;DR: Some examples were worked out using reported globin sequences to show that synonymous substitutions occur at much higher rates than amino acid-altering substitutions in evolution.
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Evolutionary trees from DNA sequences: A maximum likelihood approach

TL;DR: A computationally feasible method for finding such maximum likelihood estimates is developed, and a computer program is available that allows the testing of hypotheses about the constancy of evolutionary rates by likelihood ratio tests.