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Molecular phylogenetics and biogeography of galaxiid fishes (Osteichthyes: Galaxiidae): dispersal, vicariance, and the position of Lepidogalaxias salamandroides.

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TLDR
The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships, and the loss of this migratory phase may be a major cause of speciation.
Abstract
The galaxiid fishes exhibit a gondwanan distribution. We use mitochondrial DNA sequences to test conflicting vicariant and dispersal biogeographic hypotheses regarding the Southern Hemisphere range of this freshwater group. Although phylogenetic resolution of cytochrome b and 16S rRNA sequences is largely limited to more recent divergences, our data indicate that the radiation can be interpreted as several relatively recent dispersal events superimposed on an ancient gondwanan radiation. Genetic relationships contradict the findings of recent morphological analyses of galaxioid fishes. In particular, we examine several hypotheses regarding phylogenetic placement of the enigmatic Lepidogalaxias. Although most workers consider Lepidogalaxias to be an unusual scaled member of the Southern Hemisphere galaxioids, it has also been suggested that this species is related to the Northern Hemisphere esocoids. Our data strongly suggest that this species is not a galaxiid, and the alternative hypothesized esocoid relationship cannot be rejected. The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships. Juvenile saltwater-tolerance is phylogenetically distributed throughout the Galaxiinae, and the loss of this migratory phase may be a major cause of speciation.

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Extreme levels of intra-specific divergence among Cape Peninsula populations of the Cape galaxias, Galaxias zebratus Castelnau 1861, reveals a possible species complex

TL;DR: Results suggest that periods of low sea level may have been important in creating opportunities and alternative routes for dispersal and migration for Cape Peninsula populations.
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Are you my mother? Phylogenetic analysis reveals orphan hybrid stick insect genus is part of a monophyletic New Zealand clade.

TL;DR: Phylogenetic reconstructions resolved an exclusively New Zealand clade to which the maternal lineage of Acanthoxyla belonged, but did not support existing higher level taxonomy of stick insects.
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Biogeography of the southern cool‐temperate galaxioid fishes: evidence from metazoan macroparasite faunas

TL;DR: This study seeks evidence for coevolution between the galaxioid fish families, Galaxiidae and Retropinnidae, and their macroparasites as a means of adding to the understanding of the biogeography of the fish families.
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The effects of diadromy and its loss on genomic divergence: The case of amphidromous Galaxias maculatus populations.

TL;DR: The genetic diversity and divergence among 20 estuarine and resident populations across the Chilean distribution of G. maculatus was examined and the extent to which selection is involved in the differentiation among resident populations was assessed.
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In and out of the Neotropics: historical biogeography of Eneopterinae crickets

TL;DR: The most supported biogeographical scenario suggests that the Neotropics were colonized twice independently: first during the break-up of Gondwana, when Antarctica, Australia and South America started separating (compatible with a vicariance event if relying on the result of the DEC model alone); later through a northern recolonization originating from Southeast Asia, likely related to a Holarctic Boreotropical distribution of an eneopterine lineage during the Eocene.
References
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Journal ArticleDOI

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TL;DR: The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved and modifications are incorporated into a new program, CLUSTAL W, which is freely available.
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TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

TL;DR: Some examples were worked out using reported globin sequences to show that synonymous substitutions occur at much higher rates than amino acid-altering substitutions in evolution.
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Evolutionary trees from DNA sequences: A maximum likelihood approach

TL;DR: A computationally feasible method for finding such maximum likelihood estimates is developed, and a computer program is available that allows the testing of hypotheses about the constancy of evolutionary rates by likelihood ratio tests.