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Molecular phylogenetics and biogeography of galaxiid fishes (Osteichthyes: Galaxiidae): dispersal, vicariance, and the position of Lepidogalaxias salamandroides.

TLDR
The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships, and the loss of this migratory phase may be a major cause of speciation.
Abstract
The galaxiid fishes exhibit a gondwanan distribution. We use mitochondrial DNA sequences to test conflicting vicariant and dispersal biogeographic hypotheses regarding the Southern Hemisphere range of this freshwater group. Although phylogenetic resolution of cytochrome b and 16S rRNA sequences is largely limited to more recent divergences, our data indicate that the radiation can be interpreted as several relatively recent dispersal events superimposed on an ancient gondwanan radiation. Genetic relationships contradict the findings of recent morphological analyses of galaxioid fishes. In particular, we examine several hypotheses regarding phylogenetic placement of the enigmatic Lepidogalaxias. Although most workers consider Lepidogalaxias to be an unusual scaled member of the Southern Hemisphere galaxioids, it has also been suggested that this species is related to the Northern Hemisphere esocoids. Our data strongly suggest that this species is not a galaxiid, and the alternative hypothesized esocoid relationship cannot be rejected. The species-rich genus Galaxias is shown to be polyphyletic and the generic taxonomy of the Galaxiinae is reassessed in the light of phylogenetic relationships. Juvenile saltwater-tolerance is phylogenetically distributed throughout the Galaxiinae, and the loss of this migratory phase may be a major cause of speciation.

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Hydroelectric development and translocation of Galaxias brevipinnis: a cloud at the end of the tunnel?

TL;DR: Genetic analysis was used to discriminate between alternative hypotheses for Murray River G. brevipinnis: (i) anthropogenic translocation via the Snowy River diversion or (ii) a previously undiscovered natural population.
Journal ArticleDOI

Phylogenetics of the australasian mudfishes : Evolution of an eel-like body plan

TL;DR: The first molecular phylogenetic analysis of the entire genus Neochanna is presented to test for monophyly of Australian and New Zealand taxa and elucidate morphological character evolution, suggesting an evolutionary transition from a plesiomorphic "stream" galaxiid morphotype to a more specialised "anguilliform" Galaxiids morphotype.
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Deeply divergent mitochondrial lineages reveal patterns of local endemism in chironomids of the Australian Wet Tropics.

TL;DR: The results suggest that vicariant processes, most likely due to the systemic drying of the Australian continent during the Plio-Pleistocene, might have fragmented historical E. martini populations and promoted divergence in allopatry.
Journal ArticleDOI

Multiple Origins of the Juan Fernández Kelpfish Fauna and Evidence for Frequent and Unidirectional Dispersal of Cirrhitoid Fishes Across the South Pacific

TL;DR: Molecular estimates of divergence time between southeast Pacific chironemids and their western relatives predate the emergence of Juan Fernández, consistent with hypotheses that much of the marine nearshore faunas of young southeast Pacific islands may be the product of successive transfer from older, now submerged islands.
Journal ArticleDOI

Colonisation and connectivity by intertidal limpets among New Zealand, Chatham and Sub-Antarctic Islands. I. Genetic connections

TL;DR: The genetic homogeneity observed among populations of the 2 lineages, in conjunction with larval modelling, suggests that these populations are presently isolated but may have been colonised through long-dis- tance dispersal from the southern island populations within the last 100 000 yr.
References
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Journal ArticleDOI

Clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

TL;DR: The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved and modifications are incorporated into a new program, CLUSTAL W, which is freely available.
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Confidence limits on phylogenies: an approach using the bootstrap.

TL;DR: The recently‐developed statistical method known as the “bootstrap” can be used to place confidence intervals on phylogenies and shows significant evidence for a group if it is defined by three or more characters.
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

TL;DR: Some examples were worked out using reported globin sequences to show that synonymous substitutions occur at much higher rates than amino acid-altering substitutions in evolution.
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Evolutionary trees from DNA sequences: A maximum likelihood approach

TL;DR: A computationally feasible method for finding such maximum likelihood estimates is developed, and a computer program is available that allows the testing of hypotheses about the constancy of evolutionary rates by likelihood ratio tests.