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Numerical Ecology with R

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TLDR
This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language.
Abstract
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the methods by means of applied and extensively commented examples. Users are invited to use this book as a teaching companion at the computer. The travel starts with exploratory approaches, proceeds with the construction of association matrices, then addresses three families of methods: clustering, unconstrained and canonical ordination, and spatial analysis. All the necessary data files, the scripts used in the chapters, as well as the extra R functions and packages written by the authors, can be downloaded from a web page accessible through the Springer web site(http://adn.biol.umontreal.ca/ numericalecology/numecolR/). This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. The three authors teach numerical ecology, both theoretical and practical, to a wide array of audiences, in regular courses in their Universities and in short courses given around the world. Daniel Borcard is lecturer of Biostatistics and Ecology and researcher in Numerical Ecology at Universite de Montreal, Quebec, Canada. Francois Gillet is professor of Community Ecology and Ecological Modelling at Universite de Franche-Comte, Besancon, France. Pierre Legendre is professor of Quantitative Biology and Ecology at Universite de Montreal, Fellow of the Royal Society of Canada, and ISI Highly Cited Researcher in Ecology/Environment.

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Evidence from nuclear magnetic resonance spectroscopy of the processes of soil organic carbon accumulation under long‐term fertilizer management

TL;DR: In this paper, the effects of long-term application of fertilizers have a considerable effect on the accumulation of soil organic carbon (SOC), but the underlying processes remain unclear, and the chemical structures of the SOC were characterized with multiple cross-polarization magic-angle spinning 13C nuclear magnetic resonance spectroscopy.
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Predicting community-environment relationships of stream fishes across multiple drainage basins: insights into model generality and the effect of spatial extent.

TL;DR: The generality of species-environment relationships is tested by quantifying the variation in model performance and the importance of environmental variables among the thirteen sub-basins and among three spatial extents, and the relative importance of longitudinal network position, local characteristics, and catchment characteristics can vary from one region to another.
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Relative importance of management and natural flooding on spider, carabid and plant assemblages in extensively used grasslands along the Loire

TL;DR: In this article, the authors investigated the relative importance of management improvement and flooding to explain community parameters of two dominant arthropod groups and vegetation in alluvial meadows, and demonstrated that maintaining or enhancing hydrological functioning of ecosystems is even more important than regulating both the cutting-dates and the low input of fertilisers for conservation purposes in flooded, already naturally nutrient rich, meadows.
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Seed dispersal by neotropical waterfowl depends on bird species and seasonality

TL;DR: In this paper, the authors identified plant diaspores dispersed in faeces of five South American waterfowl (Brazilian teal Amazonetta brasiliensis, yellow-billed teal Anas flavirostris, Callonetta leucophrys, coscoroba swan Coscoroba cosCORoba, and whitefaced duck Dendrocygna viduata) from 165 faecal samples from five wetlands in southern Brazil surrounded by pasture and rice fields.
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Spatial and temporal variation in fish community structure and diversity in the largest tropical flood‐pulse system of South‐East Asia

TL;DR: The hydrology of the Mekong River is characterised by its extreme predictability, with regular wet and dry seasons throughout the basin (Adamson, Rutherfurd, Peel, & Conlan, 2009).
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