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Journal ArticleDOI

Rapid visualization of hydrogen positions in protein neutron crystallographic structures

TLDR
Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.
Abstract
Neutron crystallography is a powerful technique for experimental visualization of the positions of light atoms, including hydrogen and its isotope deuterium. In recent years, structural biologists have shown increasing interest in the technique as it uniquely complements X-ray crystallographic data by revealing the positions of D atoms in macromolecules. With this regained interest, access to macromolecular neutron crystallography beamlines is becoming a limiting step. In this report, it is shown that a rapid data-collection strategy can be a valuable alternative to longer data-collection times in appropriate cases. Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.

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Citations
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Journal ArticleDOI

An Overview of Biological Macromolecule Crystallization

TL;DR: The general aspects of protein crystallization are introduced, conventional and innovative crystallization methods are summarized and the new strategies utilized to improve the success rate of experiments and increase crystal diffraction quality are focused on.
Journal ArticleDOI

Sub-atomic resolution X-ray crystallography and neutron crystallography: promise, challenges and potential

TL;DR: Neutron crystallography and sub-atomic X-ray crystallography complement each other in defining hydrogen positions in macromolecules and much effort is still required to become a mainstream activity.
Journal ArticleDOI

The Bio‐SANS instrument at the High Flux Isotope Reactor of Oak Ridge National Laboratory

TL;DR: The Bio-SANS instrument of the High Flux Isotope Reactor of Oak Ridge National Laboratory (ORNL) is a high-flux low-background SANS instrument that is, uniquely among SANS instruments, dedicated to serving the needs of the structural biology and biomaterials communities as an open-access user facility as discussed by the authors.
Journal ArticleDOI

Neutron protein crystallography: A complementary tool for locating hydrogens in proteins

TL;DR: Methods to produce isotopically-substituted proteins and to grow large crystals are provided in the context of neutron structures reported in the literature along with technique-specific strategies including joint X-ray/neutron structure refinement.
Journal ArticleDOI

The IMAGINE instrument: first neutron protein structure and new capabilities for neutron macromolecular crystallography.

TL;DR: The first high-resolution neutron protein structure of perdeuterated rubredoxin from Pyrococcus furiosus (PfRd) determined using the new IMAGINE macromolecular neutron crystallography instrument at the Oak Ridge National Laboratory is reported.
References
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Journal ArticleDOI

Features and development of Coot.

TL;DR: Coot is a molecular-graphics program designed to assist in the building of protein and other macromolecular models and the current state of development and available features are presented.
Journal ArticleDOI

PHENIX: building new software for automated crystallographic structure determination

TL;DR: A novel software package called PHENIX (Python-based Hierarchical ENvironment for Integrated Xtallography) is developed, which will provide the necessary algorithms to proceed from reduced intensity data to a refined molecular model and to facilitate structure solution for both the novice and expert crystallographer.
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Remarks about protein structure precision

TL;DR: More regular use of full-matrix inversion is urged to establish positional precision and hence the precision of non-dictionary distances in both high- and low-resolution structures.
Journal ArticleDOI

Joint X-ray and neutron refinement with phenix.refine

TL;DR: The implementation of crystallographic structure-refinement procedures that include both X-ray and neutron data (separate or jointly) in the PHENIX system is described.
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