Journal ArticleDOI
Recent changes to RasMol, recombining the variants.
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I would like to thank the many people who have contributed improvements, reported bugs and tested pre-releases of the RasMol 2.7 series releases.About:
This article is published in Trends in Biochemical Sciences.The article was published on 2000-09-01. It has received 226 citations till now. The article focuses on the topics: RasMol.read more
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The Protein Data Bank
Helen M. Berman,John D. Westbrook,Zukang Feng,Gary L. Gilliland,Talapady N. Bhat,Helge Weissig,Ilya N. Shindyalov,Philip E. Bourne +7 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI
Presenting your structures: the CCP4mg molecular-graphics software.
TL;DR: The CCP4 molecular-graphics program now uses the Qt framework to provide a modern look and feel and there are many new features including rendering for publication-quality images and sequence alignment.
Journal Article
Presenting your structures: the CCP 4 mg molecular-graphics software
Journal ArticleDOI
Ras oncogenes and their downstream targets
TL;DR: The biochemical properties of RAS proteins are summarized, the evolution of Ras signaling is traced down, and an overview of the spatio-temporal activation of major RAS isoforms is presented.
Journal ArticleDOI
ProDom: Automated clustering of homologous domains
Florence Servant,Catherine Bru,Sébastien Carrère,Emmanuel Courcelle,Jérôme Gouzy,David Peyruc,Daniel Kahn +6 more
TL;DR: The ProDom database is a comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases that makes it particularly useful to help sustain the growth of InterPro.
References
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Journal ArticleDOI
The Protein Data Bank
Helen M. Berman,John D. Westbrook,Zukang Feng,Gary L. Gilliland,Talapady N. Bhat,Helge Weissig,Ilya N. Shindyalov,Philip E. Bourne +7 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI
The Protein Data Bank: a computer-based archival file for macromolecular structures.
Frances C. Bernstein,Thomas F. Koetzle,Graheme J. B. Williams,Edgar F. Meyer,Michael D. Brice,John R. Rodgers,O. Kennard,Takehiko Shimanouchi,Mitsuo Tasumi +8 more
TL;DR: The Protein Data Bank is a computer-based archival file for macromolecular structures that stores in a uniform format atomic co-ordinates and partial bond connectivities, as derived from crystallographic studies.
Journal ArticleDOI
The crystallographic information file (CIF) : a new standard archive file for crystallography
TL;DR: The specification of a new standard Crystallographic Information File (CIF) is described, based on the Self-Defining Text Archive and Retrieval (STAR) procedure, and the CIF Core Dictionary is presented in full.
Book ChapterDOI
[30] Macromolecular crystallographic information file
Philip E. Bourne,Helen M. Berman,B. McMahon,Keith D. Watenpaugh,John D. Westbrook,Paula M.D. Fitzgerald +5 more
TL;DR: The approach described in this chapter is to extend the Crystallographic Information File (CIF) data representation used for describing small-molecule structures and associated diffraction experiments to be referred to as the “macromolecularcrystallographic information file (mmCIF).
Journal ArticleDOI
Atomic resolution (0.83 A) crystal structure of the hydrophobic protein crambin at 130 K.
TL;DR: The patterns of disorder in this structure reveal important principles of protein structure and its dynamics, and suggests that co-ordinated motion extends in groups rather than simply as uncorrelated movement around an atom center.