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Thermodynamic Uncertainty Relation and Thermodynamic Speed Limit in Deterministic Chemical Reaction Networks.

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TLDR
In this article, the authors generalize the thermodynamic uncertainty relation (TUR) and thermodynamic speed limit (TSL) for deterministic chemical reaction networks (CRNs) and derive the scaled diffusion coefficient derived by considering the connection between macro-and mesoscopic CRNs.
Abstract
We generalize the thermodynamic uncertainty relation (TUR) and thermodynamic speed limit (TSL) for deterministic chemical reaction networks (CRNs). The scaled diffusion coefficient derived by considering the connection between macro- and mesoscopic CRNs plays an essential role in our results. The TUR shows that the product of the entropy production rate and the ratio of the scaled diffusion coefficient to the square of the rate of concentration change is bounded below by two. The TSL states a trade-off relation between speed and thermodynamic quantities, the entropy production, and the time-averaged scaled diffusion coefficient. The results are proved under the general setting of open and nonideal CRNs.

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Housekeeping and excess entropy production for general nonlinear dynamics

TL;DR: In this article , the authors propose a housekeeping/excess decomposition of entropy production for general nonlinear dynamics in a discrete space, including chemical reaction networks and discrete stochastic systems.
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Information geometry, trade-off relations, and generalized Glansdorff–Prigogine criterion for stability

- 17 Jan 2022 - 
TL;DR: In this paper , a relationship between information geometry and the Glansdorff-Prigogine criterion for stability is discussed, and a new perspective of stability in a nonequilibrium steady state is presented.
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Topological Speed Limit.

TL;DR: In this article , the authors derived a unified topological speed limit for the evolution of physical states using an optimal transport approach, which is applicable to a wide range of dynamics, from deterministic to stochastic, and classical to quantum systems.
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Fast Functionalization with High Performance in the Autonomous Information Engine.

TL;DR: It is shown that the relaxation dynamics of information heat engine can be accelerated significantly by devising an optimal initial state of the demon, and provides a hint that a speed-performance trade-off relation exists between the relaxation time to functional state and the average production.
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Geometric speed limit for acceleration by natural selection in evolutionary processes

TL;DR: In this article , the authors derived a new speed limit in population dynamics, which is a fundamental limit on the evolutionary rate, based on the correlation between the observable of interest and the growth rate.
References
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Journal ArticleDOI

Stochastic thermodynamics, fluctuation theorems and molecular machines

TL;DR: Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production.
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On the Equilibrium of Heterogeneous Substances

TL;DR: The article ''On the Equilibrium of Heterogeneous Substances'', which was published in ''Transactions of the Connecticut Academy of Arts and Sciences'', vol. 3 (1874-78), pp. 108-248 and 343-524 as mentioned in this paper
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The chemical Langevin equation

TL;DR: In this article, it is shown that the chemical Langevin equation can be derived from the microphysical premise from which the chemical master equation is derived, which leads directly to an approximate time-evolution equation of the Langevin type.
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Cooperation and Competition in the Evolution of ATP-Producing Pathways

TL;DR: It is shown that ATP production with a low rate and high yield can be viewed as a form of cooperative resource use and may evolve in spatially structured environments and argued that the high ATP yield of respiration may have facilitated the evolutionary transition from unicellular to undifferentiated multicellular organisms.
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A rigorous derivation of the chemical master equation

TL;DR: In this paper, it was shown that the chemical master equation is exact for any gas-phase chemical system that is kept well stirred and thermally equilibrated, and that the exactness of the master equation has no rigorous microphysical basis, and hence no a priori claim to validity.
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