A
Alma L. Burlingame
Researcher at University of California, San Francisco
Publications - 637
Citations - 48144
Alma L. Burlingame is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: Mass spectrometry & Phosphorylation. The author has an hindex of 107, co-authored 610 publications receiving 43486 citations. Previous affiliations of Alma L. Burlingame include University of Montana & University of the Pacific (United States).
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Journal ArticleDOI
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
Adam G. Larson,Daniel Elnatan,Madeline M. Keenen,Michael J. Trnka,Jonathan B. Johnston,Alma L. Burlingame,David A. Agard,Sy Redding,Geeta J. Narlikar +8 more
TL;DR: It is shown by direct protein delivery into mammalian cells that an HP1 α mutant incapable of phase separation in vitro forms smaller and fewer nuclear puncta than phosphorylated HP1α, suggesting that heterochromatin-mediated gene silencing may occur in part through sequestration of compacted chromatin in phase-separated HP1 droplets, which are dissolved or formed by specific ligands on the basis of nuclear context.
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Role of Accurate Mass Measurement (±10 ppm) in Protein Identification Strategies Employing MS or MS/MS and Database Searching
TL;DR: This work explores the advantage of using accurate mass measurement (and thus constraint on the possible elemental composition of components in a protein digest) in strategies for searching protein, gene, and EST databases that employ mass values alone, fragment-ion tagging derived from MS/MS spectra, and de novo interpretation of MS/ MS spectra.
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Structural identification of autoinducer of Photobacterium fischeri luciferase.
Anatol Eberhard,Alma L. Burlingame,C. Eberhard,George L. Kenyon,Kenneth H. Nealson,Norman J. Oppenheimer +5 more
TL;DR: In this paper, an autoinducer excreted by Photobacterium fischeri strain MJ-1 was isolated from the cell-free medium by extraction with ethyl acetate, evaporation of solvent, workup with ethanol-water mixtures, and silica gel chromatography.
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WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development
Joanna Wysocka,Tomek Swigut,Thomas A. Milne,Yali Dou,Xin Zhang,Alma L. Burlingame,Robert G. Roeder,Ali H. Brivanlou,C. David Allis +8 more
TL;DR: The results are the first demonstration that a WD40-repeat protein acts as a module for recognition of a specific histone modification and suggest a mechanism for reading and writing an epigenetic mark for gene activation.
Journal ArticleDOI
Global landscape of HIV-human protein complexes
Stefanie Jäger,Peter Cimermancic,Peter Cimermancic,Natali Gulbahce,Natali Gulbahce,Jeffrey R. Johnson,Jeffrey R. Johnson,Jeffrey R. Johnson,Kathryn E. McGovern,Kathryn E. McGovern,Starlynn Clarke,Michael Shales,Michael Shales,Gaelle Mercenne,Lars Pache,Kathy H. Li,Kathy H. Li,Hilda Hernandez,Hilda Hernandez,Gwendolyn M. Jang,Gwendolyn M. Jang,Shoshannah L. Roth,Eyal Akiva,Eyal Akiva,John M. Marlett,Melanie L. Stephens,Iván D'Orso,Iván D'Orso,Jason D Fernandes,Marie E. Fahey,Marie E. Fahey,Cathal Mahon,Cathal Mahon,Anthony J. O’Donoghue,Aleksandar Todorovic,John H. Morris,David Maltby,Tom Alber,Gerard Cagney,Frederic D. Bushman,John A. T. Young,Sumit K. Chanda,Wesley I. Sundquist,Tanja Kortemme,Tanja Kortemme,Ryan D. Hernandez,Ryan D. Hernandez,Charles S. Craik,Charles S. Craik,Alma L. Burlingame,Alma L. Burlingame,Andrej Sali,Alan D. Frankel,Alan D. Frankel,Nevan J. Krogan +54 more
TL;DR: The use of affinity tagging and purification mass spectrometry is reported to determine systematically the physical interactions of all 18 HIV-1 proteins and polyproteins with host proteins in two different human cell lines (HEK293 and Jurkat).