H
Hamid Ashrafi
Researcher at North Carolina State University
Publications - 67
Citations - 4284
Hamid Ashrafi is an academic researcher from North Carolina State University. The author has contributed to research in topics: Population & Genome. The author has an hindex of 23, co-authored 58 publications receiving 3435 citations. Previous affiliations of Hamid Ashrafi include University of California, Berkeley & Pennsylvania State University.
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Journal ArticleDOI
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Andrew H. Paterson,Jonathan F. Wendel,Heidrun Gundlach,Hui Guo,Jerry Jenkins,Dianchuan Jin,Danny J. Llewellyn,Kurtis C. Showmaker,Shengqiang Shu,Joshua A. Udall,Mi-Jeong Yoo,Robert L. Byers,Wei Chen,Adi Doron-Faigenboim,Mary V. Duke,Lei Gong,Jane Grimwood,Corrinne E. Grover,Kara Grupp,Guanjing Hu,Tae-Ho Lee,Jingping Li,Lifeng Lin,Tao Liu,Barry S. Marler,Justin T. Page,Alison W. Roberts,Elisson Romanel,William S. Sanders,Emmanuel Szadkowski,Xu Tan,Haibao Tang,Haibao Tang,Chunming Xu,Chunming Xu,Jinpeng Wang,Zining Wang,Dong Zhang,Lan Zhang,Hamid Ashrafi,Frank Bedon,John E. Bowers,Curt L. Brubaker,Curt L. Brubaker,Peng W. Chee,Sayan Das,Alan R. Gingle,Candace H. Haigler,David B. Harker,Lucia Vieira Hoffmann,Ran Hovav,Don C. Jones,Cornelia Lemke,Shahid Mansoor,Shahid Mansoor,Mehboob-ur Rahman,Lisa N. Rainville,Aditi Rambani,Umesh K. Reddy,Junkang Rong,Yehoshua Saranga,Brian E. Scheffler,Jodi A. Scheffler,David M. Stelly,Barbara A. Triplett,Allen Van Deynze,Maite F S Vaslin,V. N. Waghmare,Sally A. Walford,Robert J. Wright,Essam A. Zaki,Tianzhen Zhang,Elizabeth S. Dennis,Klaus F. X. Mayer,Daniel G. Peterson,Daniel S. Rokhsar,Xiyin Wang,Jeremy Schmutz +77 more
TL;DR: It is shown that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1–2 Myr ago, conferred about 30–36-fold duplication of ancestral angiosperm genes in elite cottons, genetic complexity equalled only by Brassica among sequenced angiosperms.
Journal ArticleDOI
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
Seungill Kim,Minkyu Park,Seon-In Yeom,Yong-Min Kim,Je Min Lee,Hyun-Ah Lee,Eunyoung Seo,Jaeyoung Choi,Kyeongchae Cheong,Ki-Tae Kim,Kyongyong Jung,Gir-Won Lee,Sang-Keun Oh,Chungyun Bae,Saet-Byul Kim,Hyeyoung Lee,Shin Young Kim,Myung-Shin Kim,Byoung-Cheorl Kang,Yeong Deuk Jo,Hee Bum Yang,Hee-Jin Jeong,Won-Hee Kang,Jin Kyung Kwon,Chanseok Shin,Jae Yun Lim,June Hyun Park,Jin Hoe Huh,June Sik Kim,Byung-Dong Kim,Oded Cohen,Ilan Paran,Mi Chung Suh,Saet Buyl Lee,Yeon Ki Kim,Younhee Shin,Seung-Jae Noh,Junhyung Park,Young Sam Seo,Suk-Yoon Kwon,Hyun A Kim,Jeong Mee Park,Hyunjin Kim,Sang Bong Choi,Paul W. Bosland,Gregory Reeves,Sung Hwan Jo,Bong Woo Lee,Hyung-Taeg Cho,Hee-Seung Choi,Min-Soo Lee,Yeisoo Yu,Yang Do Choi,Beom Seok Park,Allen Van Deynze,Hamid Ashrafi,Theresa Hill,Woo Taek Kim,Hyun Sook Pai,Hee-Kyung Ahn,Inhwa Yeam,James J. Giovannoni,James J. Giovannoni,Jocelyn K. C. Rose,Iben Sørensen,Sang Jik Lee,Ryan W. Kim,Ik-Young Choi,Beom-Soon Choi,Jong-Sung Lim,Yong-Hwan Lee,Doil Choi +71 more
TL;DR: The genome size of the hot pepper was approximately fourfold larger than that of its close relative tomato, and the genome showed an accumulation of Gypsy and Caulimoviridae family elements.
Journal ArticleDOI
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
Massimo Iorizzo,Shelby Ellison,Douglas Senalik,Douglas Senalik,Peng Zeng,Pimchanok Satapoomin,Jiaying Huang,Megan J. Bowman,Marina Iovene,Walter Sanseverino,Pablo Federico Cavagnaro,Pablo Federico Cavagnaro,Mehtap Yildiz,Alicja Macko-Podgórni,Emilia Morańska,Ewa Grzebelus,Dariusz Grzebelus,Hamid Ashrafi,Zhijun Zheng,Shifeng Cheng,David M. Spooner,David M. Spooner,Allen Van Deynze,Philipp W. Simon,Philipp W. Simon +24 more
TL;DR: A high-quality chromosome-scale assembly and analysis of the carrot genome is reported, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade, and a candidate gene, DCAR_032551, is identified that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes.
Journal ArticleDOI
Uniform ripening encodes a Golden 2-like transcription factor regulating tomato fruit chloroplast development.
Ann L. T. Powell,Cuong V. Nguyen,Theresa Hill,KaLai Lam Cheng,Rosa Figueroa-Balderas,Hakan Aktas,Hamid Ashrafi,Clara Pons,Rafael Fernández-Muñoz,Ariel Roberto Vicente,Ariel Roberto Vicente,Javier Lopez-Baltazar,Cornelius S. Barry,Yongsheng Liu,Roger T. Chetelat,Antonio Granell,Allen Van Deynze,James J. Giovannoni,James J. Giovannoni,Alan B. Bennett +19 more
TL;DR: In tomato, two Golden 2-like (GLK) transcription factors are expressed in leaves, but only SlGLK2 is expressed in fruit, which influences photosynthesis in developing fruit, contributing to mature fruit characteristics and suggesting that selection of u inadvertently compromised ripe fruit quality in exchange for desirable production traits as discussed by the authors.
Journal ArticleDOI
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
Massimo Iorizzo,Douglas Senalik,Dariusz Grzebelus,Megan J. Bowman,Pablo Federico Cavagnaro,Marta Matvienko,Marta Matvienko,Hamid Ashrafi,Allen Van Deynze,Phillpi W. Simon +9 more
TL;DR: This study confirmed the potential of short read platforms for de novo EST assembly and identification of genetic polymorphisms in carrot, and produced the first large-scale transcriptome of carrot, a species lacking genomic resources.