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Bas B. Oude Munnink
Researcher at Erasmus University Rotterdam
Publications - 103
Citations - 6396
Bas B. Oude Munnink is an academic researcher from Erasmus University Rotterdam. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 23, co-authored 74 publications receiving 3661 citations. Previous affiliations of Bas B. Oude Munnink include Wellcome Trust Sanger Institute & University of Amsterdam.
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Journal ArticleDOI
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Bas B. Oude Munnink,David F. Nieuwenhuijse,Mart L. Stein,Áine O'Toole,Manon R. Haverkate,Madelief Mollers,Sandra K Kamga,Claudia M. E. Schapendonk,Mark Pronk,Pascal Lexmond,Anne van der Linden,Theo M. Bestebroer,Irina Chestakova,Ronald J. Overmars,Stefan van Nieuwkoop,Richard Molenkamp,Annemiek A. van der Eijk,Corine H. GeurtsvanKessel,Harry Vennema,Adam Meijer,Andrew Rambaut,Jaap T. van Dissel,Reina S. Sikkema,Aura Timen,Marion Koopmans +24 more
TL;DR: The combination of near to real-time whole-genome sequence analysis and epidemiology resulted in reliable assessments of the extent of SARS-CoV-2 transmission in the community, facilitating early decision-making to control local transmission of the virus in the Netherlands.
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COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.
Reina S. Sikkema,Suzan D. Pas,David F. Nieuwenhuijse,Áine O'Toole,Jaco J. Verweij,Anne van der Linden,Irina Chestakova,Claudia M. E. Schapendonk,Mark Pronk,Pascal Lexmond,Theo M. Bestebroer,Ronald J. Overmars,Stefan van Nieuwkoop,Wouter van den Bijllaardt,Robbert G. Bentvelsen,Miranda van Rijen,Anton Buiting,Anne J.G. van Oudheusden,Bram M. W. Diederen,A.M.C. Bergmans,Annemiek A. van der Eijk,Richard Molenkamp,Andrew Rambaut,Aura Timen,Jan Kluytmans,Bas B. Oude Munnink,Marjolein Kluytmans– van den Bergh,Marion Koopmans +27 more
TL;DR: The data do not support widespread nosocomial transmission as the source of infection in patients or health-care workers, and the noted patterns were consistent with multiple introductions into the hospitals through community-acquired infections and local amplification in the community.
Journal ArticleDOI
Detection of West Nile virus in a common whitethroat (Curruca communis) and Culex mosquitoes in the Netherlands, 2020.
Reina S. Sikkema,Maarten Schrama,Tijs van den Berg,Jolien Morren,Emmanuelle Munger,Louie Krol,Louie Krol,Jordy G. van der Beek,Rody Blom,Irina Chestakova,Anne van der Linden,Marjan Boter,Tjomme van Mastrigt,Richard Molenkamp,Constantianus J. M. Koenraadt,Judith M. A. van den Brand,Bas B. Oude Munnink,Marion Koopmans,Henk P. van der Jeugd +18 more
TL;DR: Sequences generated from the positive mosquito pools clustered with sequences that originate from Germany, Austria and the Czech Republic, providing first evidence for enzootic transmission in the Netherlands.
Journal ArticleDOI
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.
Frank Konings,Mark Perkins,Jens H. Kuhn,Mark J. Pallen,Erik Alm,Brett N Archer,Amal Barakat,Trevor Bedford,Jinal N. Bhiman,Leon Caly,Lisa L. Carter,Anne Cullinane,Tulio de Oliveira,Julian Druce,Ihab El Masry,Roger Evans,George F. Gao,Alexander E. Gorbalenya,Alexander E. Gorbalenya,Esther L Hamblion,Belinda Louise Herring,Emma B. Hodcroft,Edward C. Holmes,Manish Kakkar,Shagun Khare,Marion Koopmans,Bette T. Korber,Juliana Leite,Duncan MacCannell,Marco Marklewitz,Sebastian Maurer-Stroh,Jairo Andres Mendez Rico,Vincent J. Munster,Richard A. Neher,Bas B. Oude Munnink,Boris I. Pavlin,Malik Peiris,Leo L.M. Poon,Oliver G. Pybus,Andrew Rambaut,Paola Cristina Resende,Lorenzo Subissi,Volker Thiel,Suxiang Tong,Sylvie van der Werf,Anne von Gottberg,John Ziebuhr,Maria D. Van Kerkhove +47 more
TL;DR: A group convened and led by the Virus Evolution Working Group of the World Health Organization reports on its deliberations and announces a naming scheme that will enable clear communication about SARS-CoV-2 variants of interest and concern as discussed by the authors.
Journal ArticleDOI
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2
Áine O'Toole,Verity Hill,Oliver G. Pybus,Alexander Watts,Issac I. Bogoch,Issac I. Bogoch,Kamran Khan,Kamran Khan,Jane P. Messina,Houriiyah Tegally,Richard R. Lessells,Jennifer Giandhari,Sureshnee Pillay,Kefentse Arnold Tumedi,Gape Nyepetsi,Malebogo Kebabonye,Maitshwarelo Matsheka,Madisa Mine,Sima Tokajian,Hamad Hassan,Tamara Salloum,Georgi Merhi,Jad Koweyes,Jemma L. Geoghegan,Jemma L. Geoghegan,Joep de Ligt,Xiaoyun Ren,Matthew Storey,Nikki E. Freed,Chitra Pattabiraman,Pramada Prasad,Anita Desai,Ravi Vasanthapuram,Thomas F. Schulz,Lars Steinbrück,Tanja Stadler,Antonio Parisi,Angelica Bianco,Darío García de Viedma,Sergio Buenestado-Serrano,Vítor Borges,Joana Isidro,Sílvia Duarte,João Paulo Gomes,Neta S. Zuckerman,Michal Mandelboim,Orna Mor,Torsten Seemann,Alicia Arnott,Jenny Draper,Mailie Gall,William Rawlinson,Ira Deveson,Sanmarié Schlebusch,Jamie McMahon,Lex E. X. Leong,Chuan Kok Lim,Maria Chironna,Daniela Loconsole,Antonin Bal,Laurence Josset,Edward C. Holmes,Kirsten St. George,Erica Lasek-Nesselquist,Reina S. Sikkema,Bas B. Oude Munnink,Marion Koopmans,Mia Brytting,V. Sudha rani,S. Pavani,Teemu Smura,Albert Heim,Satu Kurkela,Massab Umair,Muhammad Salman,Barbara Bartolini,Martina Rueca,Christian Drosten,Thorsten Wolff,Olin K. Silander,Dirk Eggink,Chantal Reusken,Harry Vennema,Aekyung Park,Christine V.F. Carrington,Nikita Sahadeo,Michael J. Carr,Gabo Gonzalez,Search Alliance San Diego,SeqCOVID-Spain,Tulio de Oliveira,Nuno R. Faria,Nuno R. Faria,Andrew Rambaut,Moritz U. G. Kraemer +94 more
TL;DR: In this article, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa.