B
Birgit Strodel
Researcher at Forschungszentrum Jülich
Publications - 123
Citations - 4348
Birgit Strodel is an academic researcher from Forschungszentrum Jülich. The author has contributed to research in topics: Chemistry & Molecular dynamics. The author has an hindex of 29, co-authored 106 publications receiving 2937 citations. Previous affiliations of Birgit Strodel include University of Düsseldorf & Goethe University Frankfurt.
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Journal ArticleDOI
Amyloid β Protein and Alzheimer’s Disease: When Computer Simulations Complement Experimental Studies
Jessica Nasica-Labouze,Phuong H. Nguyen,Fabio Sterpone,Olivia Berthoumieu,Nicolae-Viorel Buchete,Sébastien Côté,Alfonso De Simone,Andrew J. Doig,Peter Faller,Angel E. Garcia,Alessandro Laio,Mai Suan Li,Simone Melchionna,Normand Mousseau,Yuguang Mu,Anant K. Paravastu,Samuela Pasquali,David J. Rosenman,Birgit Strodel,Bogdan Tarus,John H. Viles,Tong Zhang,Tong Zhang,Chunyu Wang,Philippe Derreumaux,Philippe Derreumaux +25 more
TL;DR: Simulations Complement Experimental Studies Jessica Nasica-Labouze, Phuong H. Nguyen, Fabio Sterpone,† Olivia Berthoumieu,‡ Nicolae-Viorel Buchete, Sebastien Cote, Alfonso De Simone, Andrew J. Doig, and Philippe Derreumaux are authors of this paper.
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Amyloid oligomers: A joint experimental/computational perspective on Alzheimer's disease, Parkinson's disease, type II diabetes, and amyotrophic lateral sclerosis
Phuong H. Nguyen,Ayyalusamy Ramamoorthy,Bikash R. Sahoo,Jie Zheng,Peter Faller,John E. Straub,Laura Dominguez,Joan-Emma Shea,Nikolay V. Dokholyan,Alfonso De Simone,Alfonso De Simone,Buyong Ma,Buyong Ma,Ruth Nussinov,Saeed Najafi,Son Tung Ngo,Antoine Loquet,Mara Chiricotto,Pritam Ganguly,James McCarty,Mai Suan Li,Carol K. Hall,Yiming Wang,Yifat Miller,Simone Melchionna,Birgit Habenstein,Stepan Timr,Jiaxing Chen,Brianna Hnath,Birgit Strodel,Rakez Kayed,Sylvain Lesné,Guanghong Wei,Fabio Sterpone,Andrew J. Doig,Philippe Derreumaux,Philippe Derreumaux +36 more
TL;DR: In this paper, the authors review what computer, in vitro, in vivo, and pharmacological experiments tell us about the accumulation and deposition of the oligomers of the (Aβ, tau), α-synuclein, IAPP, and superoxide dismutase 1 proteins, which have been the mainstream concept underlying Alzheimer's disease, Parkinson's disease (PD), type II diabetes (T2D), and amyotrophic lateral sclerosis (ALS) research.
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Thermodynamics and kinetics of aggregation for the GNNQQNY peptide.
TL;DR: The energy landscape of the monomer and dimer are explored for the amyloidogenic heptapeptide GNNQQNY from the N-terminal prion-determining domain of the yeast protein Sup35 to find a rapid fluctuation between four different conformations, where a geometry intermediate between compact and extended structures is the most thermodynamically favorable.
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Transmembrane Structures for Alzheimer’s Aβ1−42 Oligomers
TL;DR: It is suggested that Aβ pores may consist of tetrameric and hexameric β-sheet subunits subunits, which are consistent with the results of biophysical and biochemical experiments.
Journal ArticleDOI
Effects of in vivo conditions on amyloid aggregation.
Michael C. Owen,David Gnutt,Mimi Gao,Sebastian K.T.S. Wärmländer,Jüri Jarvet,Astrid Gräslund,Roland Winter,Simon Ebbinghaus,Birgit Strodel,Birgit Strodel +9 more
TL;DR: The aim of this review is to document the progress in the research onAmyloid formation from a physicochemical perspective with a special focus on the physiological factors influencing the aggregation of the amyloid-β peptide, the islet amyloids polypeptide, α-synuclein, and the hungingtin protein.