S
Simone L. Macmil
Researcher at University of Oklahoma
Publications - 14
Citations - 2244
Simone L. Macmil is an academic researcher from University of Oklahoma. The author has contributed to research in topics: Expressed sequence tag & Gene. The author has an hindex of 11, co-authored 14 publications receiving 2047 citations.
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Journal ArticleDOI
The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young,Frédéric Debellé,Frédéric Debellé,Giles E. D. Oldroyd,René Geurts,Steven B. Cannon,Steven B. Cannon,Michael K. Udvardi,Vagner A. Benedito,Klaus F. X. Mayer,Jérôme Gouzy,Jérôme Gouzy,Heiko Schoof,Yves Van de Peer,Sebastian Proost,Douglas R. Cook,Blake C. Meyers,Manuel Spannagl,Foo Cheung,Stéphane De Mita,Vivek Krishnakumar,Heidrun Gundlach,Shiguo Zhou,Joann Mudge,Arvind K. Bharti,Jeremy D. Murray,Marina Naoumkina,Benjamin D. Rosen,Kevin A. T. Silverstein,Haibao Tang,Stephane Rombauts,Patrick X. Zhao,Peng Zhou,Valérie Barbe,Philippe Bardou,Philippe Bardou,Michael Bechner,Arnaud Bellec,Anne Berger,Hélène Bergès,Shelby L. Bidwell,Ton Bisseling,Ton Bisseling,Nathalie Choisne,Arnaud Couloux,Roxanne Denny,Shweta Deshpande,Xinbin Dai,Jeff J. Doyle,Anne Marie Dudez,Anne Marie Dudez,Andrew Farmer,Stéphanie Fouteau,Carolien Franken,Chrystel Gibelin,Chrystel Gibelin,John Gish,Steven A. Goldstein,Alvaro J. González,Pamela J. Green,Asis Hallab,Marijke Hartog,Axin Hua,Sean Humphray,Dong-Hoon Jeong,Yi Jing,Anika Jöcker,Steve Kenton,Dong-Jin Kim,Dong-Jin Kim,Kathrin Klee,Hongshing Lai,Chunting Lang,Shaoping Lin,Simone L. Macmil,Ghislaine Magdelenat,Lucy Matthews,Jamison McCorrison,Erin L. Monaghan,Jeong Hwan Mun,Jeong Hwan Mun,Fares Z. Najar,Christine Nicholson,Céline Noirot,Majesta O'Bleness,Charles Paule,Julie Poulain,Florent Prion,Florent Prion,Baifang Qin,Chunmei Qu,Ernest F. Retzel,Claire Riddle,Erika Sallet,Erika Sallet,Sylvie Samain,Nicolas Samson,Nicolas Samson,Iryna Sanders,Olivier Saurat,Olivier Saurat,Claude Scarpelli,Thomas Schiex,Béatrice Segurens,Andrew J. Severin,D. Janine Sherrier,Ruihua Shi,Sarah Sims,Susan R. Singer,Senjuti Sinharoy,Lieven Sterck,Agnès Viollet,Bing Bing Wang,Keqin Wang,Mingyi Wang,Xiaohong Wang,Jens Warfsmann,Jean Weissenbach,Doug White,James D. White,Graham B. Wiley,Patrick Wincker,Yanbo Xing,Limei Yang,Ziyun Yao,Fu Ying,Jixian Zhai,Liping Zhou,Antoine Zuber,Antoine Zuber,Jean Dénarié,Jean Dénarié,Richard A. Dixon,Gregory D. May,David C. Schwartz,Jane Rogers,Francis Quetier,Christopher D. Town,Bruce A. Roe +138 more
TL;DR: The draft sequence of the M. truncatula genome sequence is described, a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics, which provides significant opportunities to expand al falfa’s genomic toolbox.
Journal ArticleDOI
Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae.
John S Ramsey,D. S. Rider,Tom Walsh,M. De Vos,Karl H.J. Gordon,Lalit Ponnala,Simone L. Macmil,Bruce A. Roe,Georg Jander +8 more
TL;DR: Herbivorous insects use detoxification enzymes, including cytochrome P450 monooxygenases, glutathione S‐transferases, and carboxy/cholinesterases, to metabolize otherwise deleterious plant secondary metabolites to feed on plants.
Journal ArticleDOI
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations.
Yutaka Satou,Katsuhiko Mineta,Michio Ogasawara,Yasunori Sasakura,Eiichi Shoguchi,Keisuke Ueno,Lixy Yamada,Jun Matsumoto,Jessica Wasserscheid,Ken Dewar,Graham B. Wiley,Simone L. Macmil,Bruce A. Roe,Robert W. Zeller,Kenneth E. M. Hastings,Patrick Lemaire,Erika Lindquist,Toshinori Endo,Kohji Hotta,Kazuo Inaba +19 more
TL;DR: A less-fragmented assembly on the basis of scaffold-joining guided by paired-end EST and bacterial artificial chromosome (BAC) sequences, and BAC chromosomal in situ hybridization data is prepared and a greatly improved global gene model set strictly correlated with the extensive currently available EST data is presented.
Journal ArticleDOI
Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
Jianping Wang,Bruce A. Roe,Simone L. Macmil,Qingyi Yu,Jan E. Murray,Haibao Tang,Cuixia Chen,Fares Z. Najar,Graham B. Wiley,John E. Bowers,Marie-Anne Van Sluys,Daniel S. Rokhsar,Matthew E. Hudson,Stephen P. Moose,Andrew H. Paterson,Ray Ming +15 more
TL;DR: The comparable gene density between sugarcane BACs and corresponding sorghum sequences defied the notion that polyploidy species might have faster pace of gene loss due to the redundancy of multiple alleles at each locus, and can be used as a template for assembling much of the genic DNA of the autopolyploid Sugarcane genome.
Journal ArticleDOI
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
Guru Jagadeeswaran,Yun Zheng,Yong-Fang Li,Lata I. Shukla,Jessica Matts,Peter R. Hoyt,Simone L. Macmil,Graham B. Wiley,Bruce A. Roe,Weixiong Zhang,Ramanjulu Sunkar +10 more
TL;DR: Findings indicate that M. truncatula and possibly other related legumes have complex mechanisms of gene regulation involving specific and common small RNAs operating post-transcriptionally.