F
Fernando Perez
Researcher at University of California, Berkeley
Publications - 46
Citations - 8276
Fernando Perez is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Diet therapy & Python (programming language). The author has an hindex of 21, co-authored 44 publications receiving 6368 citations. Previous affiliations of Fernando Perez include University of California & University of California, Davis.
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Journal ArticleDOI
IPython: A System for Interactive Scientific Computing
Fernando Perez,Brian E. Granger +1 more
TL;DR: The IPython project as mentioned in this paper provides an enhanced interactive environment that includes, among other features, support for data visualization and facilities for distributed and parallel computation for interactive work and a comprehensive library on top of which more sophisticated systems can be built.
Proceedings ArticleDOI
Jupyter Notebooks – a publishing format for reproducible computational workflows
Thomas Kluyver,Benjamin Ragan-Kelley,Fernando Perez,Brian E. Granger,Matthias Bussonnier,Jonathan Frederic,Kyle Kelley,Jessica B. Hamrick,Jason Grout,Sylvain Corlay,Paul Ivanov,Damián Avila,Safia Abdalla,Carol Willing +13 more
TL;DR: Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable, is presented.
Journal ArticleDOI
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Adam P. Arkin,Adam P. Arkin,Robert W. Cottingham,Christopher S. Henry,Nomi L. Harris,Rick Stevens,Sergei Maslov,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Sunita Kumari,Meghan M Drake,Thomas Brettin,Elizabeth M. Glass,Dylan Chivian,Dan Gunter,David J. Weston,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Brian H. Davison,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Inna Dubchak,Janaka N. Edirisinghe,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,Annette Greiner,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Vivek Kumar,Miriam Land,Folker Meyer,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Taeyun Oh,Gary J. Olsen,Robert Olson,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Priya Ranjan,Pamela C. Ronald,Pamela C. Ronald,Michael C. Schatz,Samuel M. D. Seaver,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo,Dantong Yu +86 more
TL;DR: Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T.
Journal ArticleDOI
Focal brain lesions to critical locations cause widespread disruption of the modular organization of the brain
TL;DR: It is shown that focal damage to critical locations causes disruption of network organization throughout the brain and can have a widespread, nonlocal impact on brain network organization when there is damage to regions important for the communication between networks.
Proceedings ArticleDOI
Binder 2.0 - Reproducible, interactive, sharable environments for science at scale
Jupyter,Matthias Bussonnier,Jessica Zosa Forde,Jeremy Freeman,Brian E. Granger,T. Head,Chris Holdgraf,Kyle Kelley,Gladys Nalvarte,Andrew Osheroff,Michael Pacer,Yuvi Panda,Fernando Perez,Benjamin Ragan-Kelley,Carol Willing +14 more
TL;DR: Several of the design decisions and goals that went into the development of the current generation of Binder are detailed.