H
Harold D. Kim
Researcher at Georgia Institute of Technology
Publications - 35
Citations - 1262
Harold D. Kim is an academic researcher from Georgia Institute of Technology. The author has contributed to research in topics: Sticky and blunt ends & Fluorescence in situ hybridization. The author has an hindex of 13, co-authored 35 publications receiving 1041 citations.
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Journal ArticleDOI
tRNA dynamics on the ribosome during translation
TL;DR: Using single-molecule fluorescence spectroscopy, time-resolved conformational changes between fluorescently labeled tRNA have been characterized within surface-immobilized ribosomes proceeding through a complete cycle of translation elongation, suggesting that the growing peptide chain plays a role in modulating fluctuations between hybrid and classical states.
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Site-specific labeling of the ribosome for single-molecule spectroscopy
Magdalena Dorywalska,Scott C. Blanchard,Ruben L. Gonzalez,Harold D. Kim,Steven Chu,Joseph D. Puglisi +5 more
TL;DR: This work has developed a general method to label specifically the prokaryotic ribosome by hybridization of fluorescent oligonucleotides to mutated ribosomal RNA.
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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Eitan Lerner,Anders Barth,Jelle Hendrix,Benjamin Ambrose,Victoria Birkedal,Scott C. Blanchard,Richard Börner,Hoi Sung Chung,Thorben Cordes,Timothy D. Craggs,Ashok A. Deniz,Jiajie Diao,Jingyi Fei,Ruben L. Gonzalez,Irina V. Gopich,Taekjip Ha,Christian A. Hanke,Gilad Haran,Nikos S. Hatzakis,Sungchul Hohng,Seok Cheol Hong,Thorsten Hugel,Antonino Ingargiola,Chirlmin Joo,Achillefs N. Kapanidis,Harold D. Kim,Ted A. Laurence,Nam Ki Lee,Tae Hee Lee,Edward A. Lemke,Emmanuel Margeat,Jens Michaelis,Xavier Michalet,Sua Myong,Daniel Nettels,Thomas-Otavio Peulen,Evelyn Ploetz,Yair Razvag,Nicole C. Robb,Benjamin Schuler,Hamid Soleimaninejad,Chun Tang,Reza Vafabakhsh,Don C. Lamb,Claus A. M. Seidel,Shimon Weiss +45 more
TL;DR: The state-of-the-art in single-molecule FRET (smFRET) has become a mainstream technique for studying biomolecular structural dynamics as mentioned in this paper, which has generated significant progress in sample preparation, measurement procedures, data analysis, algorithms and documentation.
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Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome
Sotaro Uemura,Magdalena Dorywalska,Tae Hee Lee,Harold D. Kim,Joseph D. Puglisi,Steven Chu,Steven Chu +6 more
TL;DR: It is suggested that formation of the first peptide bond destabilizes the SD interaction, resulting in the weakening of the force with which the ribosome grips an mRNA.
Journal ArticleDOI
Probing the elastic limit of DNA bending
Tung T. Le,Harold D. Kim +1 more
TL;DR: The relationship of loop lifetime to loop size revealed a critical transition in bending stress, and the result is in quantitative agreement with the kinkable worm-like chain model, and can reproduce previously reported looping probabilities of dsDNA over the range between 50 and 200 bp.