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Benjamin Ambrose
Researcher at University of Sheffield
Publications - 12
Citations - 483
Benjamin Ambrose is an academic researcher from University of Sheffield. The author has contributed to research in topics: Single-molecule FRET & Microscope. The author has an hindex of 5, co-authored 8 publications receiving 266 citations.
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Journal ArticleDOI
Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study
Björn Hellenkamp,Björn Hellenkamp,Sonja Schmid,Sonja Schmid,Olga Doroshenko,Oleg Opanasyuk,Ralf Kühnemuth,Soheila Rezaei Adariani,Benjamin Ambrose,Mikayel Aznauryan,Anders Barth,Victoria Birkedal,Mark E. Bowen,Hongtao Chen,Thorben Cordes,Thorben Cordes,Tobias Eilert,Carel Fijen,Christian Gebhardt,Markus Götz,Giorgos Gouridis,Giorgos Gouridis,Enrico Gratton,Taekjip Ha,Pengyu Hao,Christian A. Hanke,Andreas Hartmann,Jelle Hendrix,Jelle Hendrix,Lasse L. Hildebrandt,Verena Hirschfeld,Johannes Hohlbein,Boyang Hua,Christian G. Hübner,Eleni Kallis,Achillefs N. Kapanidis,Jae-Yeol Kim,Georg Krainer,Georg Krainer,Don C. Lamb,Nam Ki Lee,Edward A. Lemke,Edward A. Lemke,Brié Levesque,Marcia Levitus,James J. McCann,Nikolaus Naredi-Rainer,Daniel Nettels,Thuy T.M. Ngo,Ruoyi Qiu,Nicole C. Robb,Carlheinz Röcker,Hugo Sanabria,Michael Schlierf,Tim Schröder,Benjamin Schuler,Henning Seidel,Lisa Streit,Johann Thurn,Philip Tinnefeld,Philip Tinnefeld,Swati Tyagi,Niels Vandenberk,Andrés Manuel Vera,Keith Weninger,Bettina Wünsch,Inna S. Yanez-Orozco,Jens Michaelis,Claus A. M. Seidel,Timothy D. Craggs,Timothy D. Craggs,Thorsten Hugel +71 more
TL;DR: A multi-laboratory study finds that single-molecule FRET is a reproducible and reliable approach for determining accurate distances in dye-labeled DNA duplexes.
Journal ArticleDOI
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Eitan Lerner,Anders Barth,Jelle Hendrix,Benjamin Ambrose,Victoria Birkedal,Scott C. Blanchard,Richard Börner,Hoi Sung Chung,Thorben Cordes,Timothy D. Craggs,Ashok A. Deniz,Jiajie Diao,Jingyi Fei,Ruben L. Gonzalez,Irina V. Gopich,Taekjip Ha,Christian A. Hanke,Gilad Haran,Nikos S. Hatzakis,Sungchul Hohng,Seok Cheol Hong,Thorsten Hugel,Antonino Ingargiola,Chirlmin Joo,Achillefs N. Kapanidis,Harold D. Kim,Ted A. Laurence,Nam Ki Lee,Tae Hee Lee,Edward A. Lemke,Emmanuel Margeat,Jens Michaelis,Xavier Michalet,Sua Myong,Daniel Nettels,Thomas-Otavio Peulen,Evelyn Ploetz,Yair Razvag,Nicole C. Robb,Benjamin Schuler,Hamid Soleimaninejad,Chun Tang,Reza Vafabakhsh,Don C. Lamb,Claus A. M. Seidel,Shimon Weiss +45 more
TL;DR: The state-of-the-art in single-molecule FRET (smFRET) has become a mainstream technique for studying biomolecular structural dynamics as mentioned in this paper, which has generated significant progress in sample preparation, measurement procedures, data analysis, algorithms and documentation.
Journal ArticleDOI
The smfBox is an open-source platform for single-molecule FRET.
Benjamin Ambrose,James Baxter,John Cully,Matthew Willmott,Elliot Steele,Benji C. Bateman,Marisa L. Martin-Fernandez,Ashley J. Cadby,Jonathan R. Shewring,Marleen Aaldering,Timothy D. Craggs +10 more
TL;DR: The smfBox is presented, a cost-effective confocal smFRET platform, providing detailed build instructions, open-source acquisition software, and full validation, thereby democratisingSmFRET for the wider scientific community.
Journal ArticleDOI
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins
Ganesh Agam,Christian Gebhardt,Milana Popara,Rebecca Mächtel,Julian Folz,Benjamin Ambrose,Neharika G. Chamachi,SangYoon Chung,Timothy D. Craggs,Marijn de Boer,Dina Grohmann,Taekjip Ha,Andreas Hartmann,Jelle Hendrix,Verena Hirschfeld,Christian G. Hübner,Thorsten Hugel,Dominik Kammerer,Hyun Seo Kang,Achillefs N. Kapanidis,Georg Krainer,Kevin Kramm,Edward A. Lemke,Eitan Lerner,Emmanuel Margeat,Kristen Martens,Jens Michaelis,Jaba Mitra,Gustavo G. Moya Muñoz,Robert E. Quast,Nicole B. Robb,Michael Sattler,Michael Schlierf,J. Schneider,Tim Schröder,Anna Sefer,Piau Siong Tan,Johann Thurn,Philip Tinnefeld,John van Noort,Shimon Weiss,Nicolas Wendler,Niels Zijlstra,Anders Barth,Claus A. M. Seidel,Don C. Lamb,Thorben Cordes +46 more
TL;DR: In this paper , an international blind study involving 19 laboratories was performed to assess the uncertainty of FRET experiments for proteins with respect to the measured FRET efficiency histograms, determination of distances, and the detection and quantification of structural dynamics.
Journal ArticleDOI
Regional conformational flexibility couples substrate specificity and scissile phosphate diester selectivity in human flap endonuclease 1
Ian A. Bennet,L. David Finger,Nicola J. Baxter,Nicola J. Baxter,Benjamin Ambrose,Andrea M. Hounslow,Mark J. Thompson,Jack C. Exell,Nur Nazihah B Md Shahari,Timothy D. Craggs,Jonathan P. Waltho,Jonathan P. Waltho,Jane A. Grasby +12 more
TL;DR: The addition of divalent metal ions to the active site of the hFEN1–DNA substrate complex demonstrates that active site changes are propagated via DNA-mediated allostery to regions key to substrate differentiation.