H
Helen Cook
Researcher at University of Copenhagen
Publications - 11
Citations - 9379
Helen Cook is an academic researcher from University of Copenhagen. The author has contributed to research in topics: String (computer science) & Identification (biology). The author has an hindex of 8, co-authored 11 publications receiving 6473 citations. Previous affiliations of Helen Cook include Technical University of Denmark & University of Cambridge.
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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk,John H. Morris,Helen Cook,Michael Kuhn,Stefan Wyder,Milan Simonovic,Alberto Santos,Nadezhda Tsankova Doncheva,Alexander Roth,Peer Bork,Lars Juhl Jensen,Christian von Mering +11 more
TL;DR: In the latest version 10.5 of STRING, the biggest changes are concerned with data dissemination: the web frontend has been completely redesigned to reduce dependency on outdated browser technologies, and the database can now also be queried from inside the popular Cytoscape software framework.
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Jaime Huerta-Cepas,Damian Szklarczyk,Davide Heller,Ana Hernández-Plaza,Sofia K. Forslund,Helen Cook,Daniel R. Mende,Ivica Letunic,Thomas Rattei,Lars Juhl Jensen,Christian von Mering,Peer Bork +11 more
TL;DR: eggNOG as discussed by the authors is a public database of orthology relationships, gene evolutionary histories and functional annotations, with a major update of the underlying genome sets, which have been expanded to 4445 representative bacteria and 168 archaea derived from 25 038 genomes.
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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas,Damian Szklarczyk,Damian Szklarczyk,Kristoffer Forslund,Helen Cook,Davide Heller,Davide Heller,Mathias C. Walter,Thomas Rattei,Daniel R. Mende,Shinichi Sunagawa,Michael Kuhn,Lars Juhl Jensen,Christian von Mering,Christian von Mering,Peer Bork,Peer Bork +16 more
TL;DR: The functional annotations of OGs have been expanded to also provide Gene Ontology terms, KEGG pathways and SMART/Pfam domains for each group, and eggNOG now provides pairwise orthology relationships within OGs based on analysis of phylogenetic trees.
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Viruses.STRING: A Virus-Host Protein-Protein Interaction Database.
Helen Cook,Nadezhda Tsankova Doncheva,Damian Szklarczyk,Christian von Mering,Lars Juhl Jensen +4 more
TL;DR: This work introduces Viruses.STRING, a protein–protein interaction database specifically catering to virus–virus and virus–host interactions, which combines evidence from experimental and text-mining channels to provide combined probabilities for interactions between viral and host proteins.
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miRandola 2017: a curated knowledge base of non-invasive biomarkers
Francesco Russo,Sebastiano Di Bella,Federica Vannini,Gabriele Berti,Flavia Scoyni,Helen Cook,Alberto Santos,Giovanni Nigita,Vincenzo Bonnici,Alessandro Laganà,Filippo Geraci,Alfredo Pulvirenti,Rosalba Giugno,Federico De Masi,Kirstine Belling,Lars Juhl Jensen,Søren Brunak,Marco Pellegrini,Alfredo Ferro +18 more
TL;DR: miRandola as discussed by the authors is a database of extracellular non-coding RNAs (ncRNAs) that was initially published in 2012, foreseeing the relevance of ncRNAs as non-invasive biomarkers.