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Ibrahim I Cisse
Researcher at Massachusetts Institute of Technology
Publications - 34
Citations - 6383
Ibrahim I Cisse is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: RNA polymerase II & Transcription (biology). The author has an hindex of 17, co-authored 32 publications receiving 4562 citations. Previous affiliations of Ibrahim I Cisse include Urbana University & Princeton University.
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Journal ArticleDOI
Coactivator condensation at super-enhancers links phase separation and gene control
Benjamin R. Sabari,Alessandra Dall’Agnese,Ann Boija,Isaac A. Klein,Isaac A. Klein,Eliot L. Coffey,Krishna Shrinivas,Brian J. Abraham,Nancy M. Hannett,Alicia V. Zamudio,John C. Manteiga,Charles H. Li,Yang Eric Guo,Daniel S. Day,Jurian Schuijers,Eliza Vasile,Sohail Malik,Denes Hnisz,Tong Ihn Lee,Ibrahim I Cisse,Robert G. Roeder,Phillip A. Sharp,Arup K. Chakraborty,Richard A. Young +23 more
TL;DR: It is postulated that super-enhancers are phase-separated multimolecular assemblies, also known as biomolecular condensates, which provide a means to compartmentalize and concentrate biochemical reactions within cells.
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Improving the Density of Jammed Disordered Packings Using Ellipsoids
Aleksandar Donev,Ibrahim I Cisse,Ibrahim I Cisse,David Sachs,Evan A. Variano,Evan A. Variano,Frank H. Stillinger,Robert Connelly,Salvatore Torquato,Paul Chaikin +9 more
TL;DR: It is shown experimentally and with a new simulation algorithm that ellipsoids can randomly pack more densely and suggested that the higher density is directly related to the higher number of degrees of freedom per particle and thus the larger number of particle contacts required to mechanically stabilize the packing.
Journal ArticleDOI
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
Won-Ki Cho,Jan-Hendrik Spille,Micca Hecht,Choongman Lee,Charles H. Li,Valentin Grube,Valentin Grube,Ibrahim I Cisse +7 more
TL;DR: This work used live-cell superresolution and light-sheet imaging to study the organization and dynamics of the Mediator coactivator and RNA polymerase II (Pol II) directly and suggests that large clusters of Mediator, recruited by transcription factors at large or clustered enhancer elements, interact with large Pol II clusters in transcriptional condensates in vivo.
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Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells
Ibrahim I Cisse,Ibrahim I Cisse,Ignacio Izeddin,Sebastien Causse,Lydia Boudarene,Adrien Senecal,Adrien Senecal,Leila Muresan,Claire Dugast-Darzacq,Claire Dugast-Darzacq,Bassam Hajj,Maxime Dahan,Maxime Dahan,Maxime Dahan,Xavier Darzacq,Xavier Darzacq +15 more
TL;DR: A quantitative single-cell approach to characterize protein spatiotemporal organization, with single-molecule sensitivity in live eukaryotic cells, suggests that transient crowding of enzymes may aid in rate-limiting steps of gene regulation.
Journal ArticleDOI
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
Yang Eric Guo,John C. Manteiga,Jonathan E. Henninger,Benjamin R. Sabari,Alessandra Dall’Agnese,Nancy M. Hannett,Jan-Hendrik Spille,Jan-Hendrik Spille,Lena K. Afeyan,Alicia V. Zamudio,Krishna Shrinivas,Brian J. Abraham,Brian J. Abraham,Ann Boija,Tim-Michael Decker,Jenna K. Rimel,Charli B. Fant,Tong Ihn Lee,Ibrahim I Cisse,Phillip A. Sharp,Dylan J. Taatjes,Richard A. Young +21 more
TL;DR: In this paper, the authors investigated whether the phosphorylation of the C-terminal domain of the RNA polymerase II (PolII) C-interaction subunit regulates the incorporation of Pol II into phase-separated condensates that are associated with transcription initiation and splicing.