J
Jeremy Schmutz
Researcher at Los Alamos National Laboratory
Publications - 11
Citations - 544
Jeremy Schmutz is an academic researcher from Los Alamos National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 5, co-authored 11 publications receiving 509 citations.
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Journal ArticleDOI
Genome Project Standards in a New Era of Sequencing
Patrick S. G. Chain,Darren Grafham,Robert S. Fulton,Michael Fitzgerald,Jessica B. Hostetler,Donna M. Muzny,Johar Ali,Bruce W. Birren,D. C. Bruce,D. C. Bruce,Christian J. Buhay,James R. Cole,Yan Ding,Shannon Dugan,Dawn Field,George M. Garrity,Richard A. Gibbs,Tina GravesT. Graves,Cliff S. Han,Cliff S. Han,Scott H. Harrison,Sarah K. Highlander,Philip Hugenholtz,H. M. Khouri,Chinnappa D. Kodira,Eugene Kolker,Nikos C. Kyrpides,D. Lang,Alla Lapidus,S. A. Malfatti,Victor Markowitz,T. Metha,Karen E. Nelson,Julian Parkhill,Samuel Pitluck,Xiang Qin,Timothy D. Read,Jeremy Schmutz,Shanmuga Sozhamannan,Peter Sterk,Robert L. Strausberg,Granger G. Sutton,Nicholas R. Thomson,James M. Tiedje,George M. Weinstock,Aye Wollam,John C. Detter +46 more
TL;DR: In this article, the authors propose a method to distinguish good from poor data sets by navigating through the databases to find the number and type of reads deposited in sequence trace repositories (and not all genomes have this available), or to identify the number of contigs or genome fragments deposited to the database.
Journal ArticleDOI
Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)
Hajnalka Kiss,Hajnalka Kiss,Markus Nett,Nicole Domin,Karin Martin,Julia A. Maresca,Alex Copeland,Alla Lapidus,Susan Lucas,Kerrie W. Berry,Tijana Glavina del Rio,Eileen Dalin,Hope Tice,Sam Pitluck,Paul G. Richardson,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Cliff Han,Cliff Han,John C. Detter,John C. Detter,Jeremy Schmutz,Thomas Brettin,Thomas Brettin,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Markus Göker,Tanja Woyke,Hans-Peter Klenk,Donald A. Bryant +35 more
TL;DR: The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae, and is of interest not only because of its rather isolated position in the tree of life, but also because HerpetOSiphon ssp.
Journal ArticleDOI
Complete genome sequence of Rhodospirillum rubrum type strain (S1T)
A. Christine Munk,Alex Copeland,Susan Lucas,Alla Lapidus,Tijana Glavina del Rio,Kerrie Barry,John C. Detter,John C. Detter,Nancy Hammon,Sanjay Israni,Sam Pitluck,Thomas Brettin,David Bruce,Cliff Han,Cliff Han,Roxanne Tapia,Roxanne Tapia,Paul Gilna,Jeremy Schmutz,F Larimer,Miriam Land,Miriam Land,Nikos C. Kyrpides,Konstantinos Mavromatis,Paul G. Richardson,Manfred Rohde,Markus Göker,Hans-Peter Klenk,Yaoping Zhang,Gary P. Roberts,Susan Reslewic,David C. Schwartz +31 more
TL;DR: The genome sequence of strain S1T is only the second genome of a member of the genus Rhodospirillum to be published, but the first type strain genome from the genus.
Journal ArticleDOI
Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)
Alex Copeland,Kathleen O'Connor,Susan Lucas,Alla Lapidus,Kerrie W. Berry,John C. Detter,John C. Detter,Tijana Glavina del Rio,Nancy Hammon,Eileen Dalin,Hope Tice,Sam Pitluck,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Cliff Han,Cliff Han,Roxanne Tapia,Roxanne Tapia,Elizabeth Saunders,Elizabeth Saunders,Jeremy Schmutz,Thomas Brettin,Thomas Brettin,Frank W. Larimer,Frank W. Larimer,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Carmen Vargas,Joaquín J. Nieto,Nikos C. Kyrpides,Natalia Ivanova,Markus Göker,Hans-Peter Klenk,Laszlo N. Csonka,Tanja Woyke +38 more
TL;DR: This work has sequenced the genome of Chromohalobacter salexigens, which is the most halotolerant of the so-called ‘moderately halophilic bacteria’ currently known and is an established model organism for prokaryotic osmoadaptation.
Journal ArticleDOI
Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)
Linda Meincke,Linda Meincke,Alex Copeland,Alla Lapidus,Susan Lucas,Kerrie W. Berry,Tijana Glavina del Rio,Nancy Hammon,Eileen Dalin,Hope Tice,Sam Pitluck,Paul G. Richardson,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Cliff Han,Cliff Han,Roxanne Tapia,Roxanne Tapia,John C. Detter,John C. Detter,Jeremy Schmutz,Thomas Brettin,Thomas Brettin,Frank W. Larimer,Frank W. Larimer,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Markus Göker,Tanja Woyke,Qinglong L. Wu,Matthias Pöckl,Martin W. Hahn,Hans-Peter Klenk +38 more
TL;DR: The features of P. necessarius asymbioticus are described together with the complete genome sequence and annotation, which is the first completed genome sequence of the genus Polynucleobacter to be published and was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program 2006.