J
John Anema
Researcher at Spectrum Health
Publications - 20
Citations - 3243
John Anema is an academic researcher from Spectrum Health. The author has contributed to research in topics: PBRM1 & Renal cell carcinoma. The author has an hindex of 12, co-authored 18 publications receiving 2939 citations.
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Journal ArticleDOI
Exome sequencing identifies frequent mutation of the SWI/SNF Complex Gene PBRM1 in renal carcinoma
Ignacio Varela,Patrick S. Tarpey,Keiran Raine,Dachuan Huang,Choon Kiat Ong,Philip J. Stephens,Helen Davies,David T. Jones,Meng-Lay Lin,Jon W. Teague,Graham R. Bignell,Adam Butler,Juok Cho,Gillian L. Dalgliesh,Danushka Galappaththige,Christopher Greenman,Claire Hardy,Mingming Jia,Calli Latimer,King Wai Lau,John Marshall,Stuart McLaren,Andrew Menzies,Laura Mudie,Lucy Stebbings,David A. Largaespada,Lodewyk F. A. Wessels,Stéphane Richard,Stéphane Richard,Richard J. Kahnoski,John Anema,David A. Tuveson,Pedro A. Perez-Mancera,Ville Mustonen,Andrej Fischer,Andrej Fischer,David J. Adams,Alistair G. Rust,Waraporn Chan-on,Chutima Subimerb,Karl Dykema,Kyle A. Furge,Peter J. Campbell,Bin Tean Teh,Bin Tean Teh,Michael R. Stratton,P. Andrew Futreal +46 more
TL;DR: The protein coding exome is sequenced in a series of primary ccRCC and the identification of the SWI/SNF chromatin remodelling complex gene PBRM1 is reported as a second majorccRCC cancer gene, with truncating mutations in 41% (92/227) of cases.
Journal ArticleDOI
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
Gillian L. Dalgliesh,Kyle A. Furge,Christopher Greenman,Lina Chen,Graham R. Bignell,Adam Butler,Helen Davies,Sarah Edkins,Claire Hardy,Calli Latimer,Jon W. Teague,Jenny Andrews,Syd Barthorpe,Dave Beare,Gemma Buck,Peter J. Campbell,Simon A. Forbes,Mingming Jia,David T. Jones,Henry Knott,Chai Yin Kok,King Wai Lau,Catherine Leroy,Meng-Lay Lin,David J. McBride,Mark Maddison,Simon Maguire,Kirsten McLay,Andrew Menzies,Tatiana Mironenko,Lee Mulderrig,Laura Mudie,Sarah O’Meara,Erin Pleasance,Aarjunan Rajasingham,Rebecca Shepherd,Raffaella Smith,Lucy Stebbings,Philip J. Stephens,Gurpreet Tang,Patrick S. Tarpey,Kelly Turrell,Karl Dykema,Sok Kean Khoo,David Petillo,Bill Wondergem,John Anema,Richard J. Kahnoski,Bin Tean Teh,Bin Tean Teh,Michael R. Stratton,Michael R. Stratton,P. Andrew Futreal +52 more
TL;DR: The identification of inactivating mutations in two genes encoding enzymes involved in histone modification and NF2 mutations were found in non-VHL mutated ccRCC, and several other probable cancer genes were identified, indicating that substantial genetic heterogeneity exists in a cancer type dominated by mutations in a single gene.
Journal ArticleDOI
A Molecular Classification of Papillary Renal Cell Carcinoma
Ximing J. Yang,Min-Han Tan,Min-Han Tan,Hyung L. Kim,Jonathon A. Ditlev,Mark Betten,Carolina E. Png,Eric J. Kort,Kunihiko Futami,Kyle A. Furge,Masayuki Takahashi,Masayuki Takahashi,Hiro-omi Kanayama,Puay Hoon Tan,Bin Sing Teh,Chunyan Luan,Kim L. Wang,Michael R. Pins,Maria Tretiakova,John Anema,Richard J. Kahnoski,Theresa L. Nicol,Walter M. Stadler,Nicholas G. Vogelzang,Robert J. Amato,David Seligson,Robert A. Figlin,Arie S. Belldegrun,Craig G. Rogers,Bin Tean Teh +29 more
TL;DR: Two molecular subclasses of PRCC are reported, which are biologically and clinically distinct and may be readily distinguished in a clinical setting and identified two highly distinct molecular PRCC subclasses with morphologic correlation.
Journal ArticleDOI
MicroRNA profiling of human kidney cancer subtypes
TL;DR: It is suggested that overexpression of S-has-miR-32 is associated with poor outcome and the utility of miRNA expression profiling to identify a signature unique to various tumor subtypes at a single anatomic locus is demonstrated.
Journal ArticleDOI
CUL3 and NRF2 mutations confer an NRF2 activation phenotype in a sporadic form of papillary renal cell carcinoma
Aikseng Ooi,Karl Dykema,Asif Ansari,David Petillo,John Snider,Richard J. Kahnoski,John Anema,David Craig,John D. Carpten,Bin Tean Teh,Kyle A. Furge +10 more
TL;DR: In this article, the authors show that mutations in NRF2, CUL3, and SIRT1 are responsible for driving the activation phenotype in sporadic PRCC2 transcriptome sequencing.