J
John W. Davey
Researcher at University of York
Publications - 48
Citations - 8823
John W. Davey is an academic researcher from University of York. The author has contributed to research in topics: Heliconius & Heliconius melpomene. The author has an hindex of 25, co-authored 48 publications receiving 7429 citations. Previous affiliations of John W. Davey include University of Cambridge & Ghent University.
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Genome-wide genetic marker discovery and genotyping using next-generation sequencing.
TL;DR: Best practices for several NGS methods for genome-wide genetic marker development and genotyping that use restriction enzyme digestion of target genomes to reduce the complexity of the target.
Journal ArticleDOI
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Kanchon K. Dasmahapatra,James R. Walters,Adriana D. Briscoe,John W. Davey,Annabel Whibley,Nicola J. Nadeau,Aleksey V. Zimin,Daniel S.T. Hughes,Laura Ferguson,Simon H. Martin,Camilo Salazar,Camilo Salazar,James J. Lewis,Sebastian Adler,Seung-Joon Ahn,Dean A. Baker,Simon W. Baxter,Nicola Chamberlain,Ritika Chauhan,Brian A. Counterman,Tamas Dalmay,Lawrence E. Gilbert,Karl H.J. Gordon,David G. Heckel,Heather M. Hines,Katharina J. Hoff,Peter W. H. Holland,Emmanuelle Jacquin-Joly,Francis M. Jiggins,Robert T. Jones,Durrell D. Kapan,Durrell D. Kapan,Paul J. Kersey,Gerardo Lamas,Daniel Lawson,Daniel Mapleson,Luana S. Maroja,Arnaud Martin,Simon Moxon,William J. Palmer,Riccardo Papa,Alexie Papanicolaou,Yannick Pauchet,David A. Ray,Neil Rosser,Steven L. Salzberg,Megan A. Supple,Alison K. Surridge,Ayşe Tenger-Trolander,Heiko Vogel,Paul A. Wilkinson,Derek Wilson,James A. Yorke,Furong Yuan,Alexi Balmuth,Cathlene Eland,Karim Gharbi,Marian Thomson,Richard A. Gibbs,Yi Han,Joy Jayaseelan,Christie Kovar,Tittu Mathew,Donna M. Muzny,Fiona Ongeri,Ling-Ling Pu,Jiaxin Qu,Rebecca Thornton,Kim C. Worley,Yuanqing Wu,Mauricio Linares,Mark Blaxter,Richard H. ffrench-Constant,Mathieu Joron,Marcus R. Kronforst,Sean P. Mullen,Robert D. Reed,Steven E. Scherer,Stephen Richards,James Mallet,James Mallet,W. Owen McMillan,Chris D. Jiggins,Chris D. Jiggins +83 more
TL;DR: It is inferred that closely related Heliconius species exchange protective colour-pattern genes promiscuously, implying that hybridization has an important role in adaptive radiation.
Journal ArticleDOI
RADSeq: next-generation population genetics
John W. Davey,Mark Blaxter +1 more
TL;DR: Banerjee et al. as mentioned in this paper proposed Restriction-site associated DNA sequencing, a method that samples at reduced complexity across target genomes, promising to deliver high resolution population genomic data-thousands of sequenced markers across many individuals at reasonable costs.
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Genotyping‐by‐sequencing in ecological and conservation genomics
TL;DR: This special issue on ‘Genotyping-by-Sequencing in Ecological and Conservation Genomics’ represents a diverse set of empirical and theoretical studies that demonstrate both the utility and some of the challenges of GBS in ecological and conservation genomics.
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Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
TL;DR: It is found that D is unreliable in this situation as it gives inflated values when effective population size is low, causing D outliers to cluster in genomic regions of reduced diversity, and a related statistic f^d is proposed, a modified version of a statistic originally developed to estimate the genome-wide fraction of admixture.