L
Ling-Ling Pu
Researcher at Baylor College of Medicine
Publications - 7
Citations - 5162
Ling-Ling Pu is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Genome & Population. The author has an hindex of 6, co-authored 7 publications receiving 4668 citations.
Papers
More filters
Journal ArticleDOI
The Drosophila melanogaster Genetic Reference Panel
Trudy F. C. Mackay,Stephen Richards,Eric A. Stone,Antonio Barbadilla,Julien F. Ayroles,Julien F. Ayroles,Dianhui Zhu,Sònia Casillas,Yi Han,Michael M. Magwire,Julie M. Cridland,Mark F. Richardson,Robert R. H. Anholt,Maite G. Barrón,Crystal Bess,Kerstin P. Blankenburg,Mary Anna Carbone,David Castellano,Lesley S. Chaboub,Laura H Duncan,Zeke Harris,Mehwish Javaid,Joy Jayaseelan,Shalini N. Jhangiani,Katherine W. Jordan,Fremiet Lara,Faye Lawrence,Sandra L. Lee,Pablo Librado,Raquel S. Linheiro,Richard F. Lyman,Aaron J. Mackey,Mala Munidasa,Donna M. Muzny,Lynne V. Nazareth,Irene Newsham,Lora Perales,Ling-Ling Pu,Carson Qu,Miquel Ràmia,Jeffrey G. Reid,Stephanie M. Rollmann,Stephanie M. Rollmann,Julio Rozas,Nehad Saada,Lavanya Turlapati,Kim C. Worley,Yuanqing Wu,Akihiko Yamamoto,Yiming Zhu,Casey M. Bergman,Kevin R. Thornton,David Mittelman,Richard A. Gibbs +53 more
TL;DR: The Drosophila melanogaster Genetic Reference Panel is described, a community resource for analysis of population genomics and quantitative traits, which reveals reduced polymorphism in centromeric autosomal regions and the X chromosomes, evidence for positive and negative selection, and rapid evolution of the X chromosome.
Journal ArticleDOI
Evolutionary and biomedical insights from the rhesus macaque genome
Richard A. Gibbs,Jeffrey Rogers,Michael G. Katze,Roger E. Bumgarner,George M. Weinstock,Elaine R. Mardis,Karin A. Remington,Robert L. Strausberg,J. Craig Venter,Richard K. Wilson,Mark A. Batzer,Carlos Bustamante,Evan E. Eichler,Matthew W. Hahn,Ross C. Hardison,Kateryna D. Makova,Webb Miller,Aleksandar Milosavljevic,Robert E. Palermo,Adam Siepel,James M. Sikela,Tony Attaway,Stephanie Bell,Kelly E. Bernard,Christian J. Buhay,Mimi N. Chandrabose,Marvin Diep Dao,Clay Davis,Kimberly D. Delehaunty,Yan Ding,Huyen Dinh,Shannon Dugan-Rocha,Lucinda Fulton,Ramatu Ayiesha Gabisi,Toni T. Garner,Jennifer Godfrey,Alicia Hawes,Judith Hernandez,Sandra Hines,Michael Holder,Jennifer Hume,Shalini N. Jhangiani,Vandita Joshi,Ziad Khan,Ewen F. Kirkness,Andrew Cree,R. Gerald Fowler,Sandra L. Lee,Lora Lewis,Zhangwan Li,Yih-shin Liu,Stephanie M. Moore,Donna M. Muzny,Lynne V. Nazareth,Dinh Ngoc Ngo,Geoffrey Okwuonu,Grace Pai,David A. Parker,Heidie A. Paul,Cynthia Pfannkoch,Craig Pohl,Yu-Hui Rogers,San Juana Ruiz,Aniko Sabo,Jireh Santibanez,Brian W. Schneider,Scott M. Smith,Erica Sodergren,Amanda F. Svatek,Teresa Utterback,Selina Vattathil,Wesley C. Warren,Courtney Sherell White,Asif T. Chinwalla,Yucheng Feng,Aaron L. Halpern,LaDeana W. Hillier,Xiaoqiu Huang,Patrick Minx,Joanne O. Nelson,Kymberlie H. Pepin,Xiang Qin,Granger G. Sutton,Eli Venter,Brian P. Walenz,John W. Wallis,Kim C. Worley,Shiaw-Pyng Yang,Steven J. M. Jones,Marco A. Marra,Mariano Rocchi,Jacqueline E. Schein,Robert Baertsch,Laura Clarke,Miklós Csürös,Jarret Glasscock,R. Alan Harris,Paul Havlak,Andrew R. Jackson,Huaiyang Jiang,Yue Liu,David N. Messina,Yufeng Shen,Henry Xing-Zhi Song,Todd Wylie,Lan Zhang,Ewan Birney,Kyudong Han,Miriam K. Konkel,Jungnam Lee,Arian F.A. Smit,Brygg Ullmer,Hui Wang,Jinchuan Xing,Jinchuan Xing,Richard Burhans,Ze Cheng,John E. Karro,Jian Ma,Brian J. Raney,Xinwei She,Michael J. Cox,Jeffery P. Demuth,Laura J. Dumas,Sang-Gook Han,Janet A. Hopkins,Anis Karimpour-Fard,Young Ho Kim,Jonathan R. Pollack,Tomas Vinar,Charles Addo-Quaye,Jeremiah D. Degenhardt,Alexandra Denby,Melissa J. Hubisz,Amit Indap,Carolin Kosiol,Bruce T. Lahn,Heather A. Lawson,Alison Marklein,Rasmus Nielsen,Eric J. Vallender,Andrew G. Clark,Betsy Ferguson,Ryan D. Hernandez,Kashif Hirani,Hildegard Kehrer-Sawatzki,Jessica Kolb,Shobha Patil,Ling-Ling Pu,Yanru Ren,David Glenn Smith,David A. Wheeler,Ian Schenck,Edward V. Ball,Rui Chen,David Neil Cooper,Belinda Giardine,Fan Hsu,W. James Kent,Arthur M. Lesk,David L. Nelson,William E. O'Brien,Kay Prüfer,Peter D. Stenson,James C. Wallace,Hui Ke,Xiaoming Liu,Peng Wang,Andy Peng Xiang,Fan Yang,Galt P. Barber,David Haussler,David Haussler,Donna Karolchik,Andrew D. Kern,Robert M. Kuhn,Kayla E. Smith,Ann S. Zwieg +177 more
TL;DR: The genome sequence of an Indian-origin Macaca mulatta female is determined and compared with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families.
Journal ArticleDOI
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Kanchon K. Dasmahapatra,James R. Walters,Adriana D. Briscoe,John W. Davey,Annabel Whibley,Nicola J. Nadeau,Aleksey V. Zimin,Daniel S.T. Hughes,Laura Ferguson,Simon H. Martin,Camilo Salazar,Camilo Salazar,James J. Lewis,Sebastian Adler,Seung-Joon Ahn,Dean A. Baker,Simon W. Baxter,Nicola Chamberlain,Ritika Chauhan,Brian A. Counterman,Tamas Dalmay,Lawrence E. Gilbert,Karl H.J. Gordon,David G. Heckel,Heather M. Hines,Katharina J. Hoff,Peter W. H. Holland,Emmanuelle Jacquin-Joly,Francis M. Jiggins,Robert T. Jones,Durrell D. Kapan,Durrell D. Kapan,Paul J. Kersey,Gerardo Lamas,Daniel Lawson,Daniel Mapleson,Luana S. Maroja,Arnaud Martin,Simon Moxon,William J. Palmer,Riccardo Papa,Alexie Papanicolaou,Yannick Pauchet,David A. Ray,Neil Rosser,Steven L. Salzberg,Megan A. Supple,Alison K. Surridge,Ayşe Tenger-Trolander,Heiko Vogel,Paul A. Wilkinson,Derek Wilson,James A. Yorke,Furong Yuan,Alexi Balmuth,Cathlene Eland,Karim Gharbi,Marian Thomson,Richard A. Gibbs,Yi Han,Joy Jayaseelan,Christie Kovar,Tittu Mathew,Donna M. Muzny,Fiona Ongeri,Ling-Ling Pu,Jiaxin Qu,Rebecca Thornton,Kim C. Worley,Yuanqing Wu,Mauricio Linares,Mark Blaxter,Richard H. ffrench-Constant,Mathieu Joron,Marcus R. Kronforst,Sean P. Mullen,Robert D. Reed,Steven E. Scherer,Stephen Richards,James Mallet,James Mallet,W. Owen McMillan,Chris D. Jiggins,Chris D. Jiggins +83 more
TL;DR: It is inferred that closely related Heliconius species exchange protective colour-pattern genes promiscuously, implying that hybridization has an important role in adaptive radiation.
Journal ArticleDOI
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
Wen Huang,Andreas Massouras,Andreas Massouras,Yutaka Inoue,Jason A. Peiffer,Miquel Ràmia,Aaron M. Tarone,Lavanya Turlapati,Thomas Zichner,Dianhui Zhu,Richard F. Lyman,Michael M. Magwire,Kerstin P. Blankenburg,Mary Anna Carbone,Kyle Chang,Lisa L. Ellis,Sonia Fernandez,Yi Han,Gareth Highnam,Carl E. Hjelmen,John Jack,Mehwish Javaid,Joy Jayaseelan,Divya Kalra,Sandy Lee,Lora Lewis,Mala Munidasa,Fiona Ongeri,Shohba Patel,Lora Perales,Agapito Perez,Ling-Ling Pu,Stephanie M. Rollmann,Robert Ruth,Nehad Saada,Crystal B. Warner,Aneisa Williams,Yuanqing Wu,Akihiko Yamamoto,Yiqing Zhang,Yiming Zhu,Robert R. H. Anholt,Jan O. Korbel,David Mittelman,Donna M. Muzny,Richard A. Gibbs,Antonio Barbadilla,J. Spencer Johnston,Eric A. Stone,Stephen Richards,Bart Deplancke,Bart Deplancke,Trudy F. C. Mackay +52 more
TL;DR: An integrated genotyping strategy was used to identify 4,853,802 single nucleotide polymorphisms (SNPs) and 1,296,080 non-SNP variants and identified 16 polymorphic inversions in the DGRP, finding variation in genome size and many quantitative traits are significantly associated with inversions.
Journal ArticleDOI
The genomes of two key bumblebee species with primitive eusocial organization
Ben M. Sadd,Ben M. Sadd,Seth M. Barribeau,Seth M. Barribeau,Guy Bloch,Dirk C. de Graaf,Peter K. Dearden,Christine G. Elsik,Christine G. Elsik,Jürgen Gadau,Cornelis J. P. Grimmelikhuijzen,Martin Hasselmann,Jeffrey D. Lozier,Hugh M. Robertson,Guy Smagghe,Eckart Stolle,Matthias Van Vaerenbergh,Robert M. Waterhouse,Erich Bornberg-Bauer,Steffen Klasberg,Anna K. Bennett,Francisco Câmara,Roderic Guigó,Katharina J. Hoff,Marco Mariotti,Monica Munoz-Torres,Monica Munoz-Torres,Terence Murphy,Didac Santesmasses,Gro V. Amdam,Matthew Beckers,Martin Beye,Matthias Biewer,Matthias Biewer,Márcia Maria Gentile Bitondi,Mark Blaxter,Andrew F. G. Bourke,Mark J. F. Brown,Séverine D. Buechel,Rossanah Cameron,Kaat Cappelle,James C. Carolan,Olivier Christiaens,Kate L. Ciborowski,David F. Clarke,Thomas J. Colgan,David Collins,Andrew G. Cridge,Tamas Dalmay,Stephanie Dreier,Louis du Plessis,Louis du Plessis,Elizabeth J. Duncan,Silvio Erler,Jay D. Evans,Tiago Falcon,Kevin B. Flores,Flávia Cristina de Paula Freitas,Taro Fuchikawa,Taro Fuchikawa,Tanja Gempe,Klaus Hartfelder,Frank Hauser,Sophie Helbing,Fernanda C. Humann,Frano Irvine,Lars S. Jermiin,Claire E. Johnson,Reed M. Johnson,Andrew K. Jones,Tatsuhiko Kadowaki,Jonathan H. Kidner,Vasco Koch,Arian Köhler,F. Bernhard Kraus,H. Michael G. Lattorff,Megan Leask,Gabrielle A. Lockett,Eamonn B. Mallon,David S. Marco Antonio,Monika Marxer,Ivan Meeus,Robin F. A. Moritz,Ajay Nair,Kathrin Näpflin,Inga Nissen,Jinzhi Niu,Francis M. F. Nunes,John G. Oakeshott,Amy J. Osborne,Marianne Otte,Daniel Guariz Pinheiro,Nina Rossié,Olav Rueppell,Carolina G. Santos,Regula Schmid-Hempel,Björn D. Schmitt,Christina Schulte,Zilá Luz Paulino Simões,Michelle P.M. Soares,Luc Swevers,Eva C. Winnebeck,Florian Wolschin,Florian Wolschin,Na Yu,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Peshtewani K. Aqrawi,Kerstin P. Blankenburg,Marcus Coyle,Liezl Francisco,Alvaro G. Hernandez,Michael Holder,Matthew E. Hudson,LaRonda Jackson,Joy Jayaseelan,Vandita Joshi,Christie Kovar,Sandra L. Lee,Robert Mata,Tittu Mathew,Irene Newsham,Robin Ngo,Geoffrey Okwuonu,Christopher Pham,Ling-Ling Pu,Nehad Saada,Jireh Santibanez,DeNard Simmons,Rebecca Thornton,Aarti Venkat,Kimberly K. O. Walden,Yuanqing Wu,Griet Debyser,Bart Devreese,Claire Asher,Julie Blommaert,Ariel D. Chipman,Lars Chittka,Bertrand Fouks,Bertrand Fouks,Jisheng Liu,Jisheng Liu,Meaghan P. O’Neill,Seirian Sumner,Daniela Puiu,Jiaxin Qu,Steven L. Salzberg,Steven E. Scherer,Donna M. Muzny,Stephen Richards,Gene E. Robinson,Richard A. Gibbs,Paul Schmid-Hempel,Kim C. Worley +154 more
TL;DR: Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.