K
Karin Lagesen
Researcher at University of Oslo
Publications - 37
Citations - 7055
Karin Lagesen is an academic researcher from University of Oslo. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 17, co-authored 33 publications receiving 6065 citations. Previous affiliations of Karin Lagesen include Technical University of Denmark & Oslo University Hospital.
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Journal ArticleDOI
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen,Peter Fischer Hallin,Einar Andreas Rødland,Hans Henrik Stærfeldt,Torbjørn Rognes,David W. Ussery +5 more
TL;DR: Results from running RNAmmer on a large set of genomes indicate that the location of rRNAs can be predicted with a very high level of accuracy.
Journal ArticleDOI
The genome sequence of Atlantic cod reveals a unique immune system
Bastiaan Star,Alexander J. Nederbragt,Sissel Jentoft,Unni Grimholt,Martin Malmstrøm,Tone F. Gregers,Trine B. Rounge,Jonas Paulsen,Jonas Paulsen,Monica Hongrø Solbakken,Animesh Sharma,Ola F. Wetten,Ola F. Wetten,Anders Lanzén,Roger Winer,James D.R. Knight,Jan-Hinnerk Vogel,Bronwen Aken,Øivind Andersen,Karin Lagesen,Ave Tooming-Klunderud,Rolf B. Edvardsen,Kirubakaran G. Tina,Kirubakaran G. Tina,Mari Espelund,Chirag Nepal,Christopher Previti,Bård Ove Karlsen,Truls Moum,Morten Skage,Paul R. Berg,Tor Gjøen,Heiner Kuhl,Jim Thorsen,Ketil Malde,Richard Reinhardt,Lei Du,Steinar Johansen,Steinar Johansen,Steve Searle,Sigbjørn Lien,Frank Nilsen,Inge Jonassen,Stig W. Omholt,Stig W. Omholt,Nils Christian Stenseth,Kjetill S. Jakobsen +46 more
TL;DR: The genome sequence of Atlantic cod is presented, showing evidence for complex thermal adaptations in its haemoglobin gene cluster and an unusual immune architecture compared to other sequenced vertebrates.
Journal ArticleDOI
Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
TL;DR: Normal female urine displays a noticeable and variable bacterial 16S rDNA sequence richness, which includes fastidious and anaerobic bacteria previously shown to be associated with female urogenital pathology.
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Alterations of microbiota in urine from women with interstitial cystitis
TL;DR: This study demonstrates that high throughput sequencing analysis of urine microbiota in IC patients is a powerful tool towards a better understanding of this enigmatic disease.
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CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics
TL;DR: The CMG-biotools system allows the user to compare multiple genomes, from various sources using standardized data formats and intuitive visualizations of results, and clearly shows that users with limited computational experience can perform complicated analysis without much training.