K
Kartik Pattabiraman
Researcher at Yale University
Publications - 15
Citations - 816
Kartik Pattabiraman is an academic researcher from Yale University. The author has contributed to research in topics: Cerebral cortex & Enhancer. The author has an hindex of 7, co-authored 14 publications receiving 665 citations. Previous affiliations of Kartik Pattabiraman include University of California, San Francisco & Brown University.
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Journal ArticleDOI
A High-Resolution Enhancer Atlas of the Developing Telencephalon
Axel Visel,Axel Visel,Leila Taher,Hani Z. Girgis,Dalit May,Olga Golonzhka,Renée V. Hoch,Gabriel L. McKinsey,Kartik Pattabiraman,Shanni N. Silberberg,Matthew J. Blow,David V. Hansen,Alexander Nord,Jennifer A. Akiyama,Amy Holt,Roya Hosseini,Sengthavy Phouanenavong,Ingrid Plajzer-Frick,Malak Shoukry,Veena Afzal,Tommy Kaplan,Tommy Kaplan,Arnold R. Kriegstein,Edward M. Rubin,Edward M. Rubin,Ivan Ovcharenko,Len A. Pennacchio,Len A. Pennacchio,John L.R. Rubenstein +28 more
TL;DR: A digital atlas of in vivo enhancers active in subregions of the developing telencephalon, identifying more than 4,600 candidate embryonic forebrain enhancers and studying the in vivo activity of 329 of these sequences in transgenic mouse embryos is described.
Journal ArticleDOI
Melanopsin ganglion cells use a membrane-associated rhabdomeric phototransduction cascade.
Dustin M. Graham,Kwoon Y. Wong,Peter Shapiro,Courtney Frederick,Kartik Pattabiraman,David M. Berson +5 more
TL;DR: A membrane-associated phosphoinositide cascade lies at the heart of the ipRGC phototransduction mechanism, similar to the cascade in rhabdomeric photoreceptors of invertebrate eyes, and reinforces the emerging view that these cells have a common evolutionary origin.
Journal ArticleDOI
Genomic Perspectives of Transcriptional Regulation in Forebrain Development
TL;DR: The current knowledge of how transcription factors drive gene expression programs through their interactions with cis-acting genomic elements, such as enhancers, is discussed; how analyses of chromatin and DNA modifications provide insights into gene expression states; and how these approaches yield insights into the evolution of the human brain.
Journal ArticleDOI
Transcriptional Regulation of Enhancers Active in Protodomains of the Developing Cerebral Cortex
Kartik Pattabiraman,Olga Golonzhka,Susan Lindtner,Alexander Nord,Leila Taher,Renée V. Hoch,Shanni N. Silberberg,Dongji Zhang,Bin Chen,Hong Kui Zeng,Len A. Pennacchio,Luis Puelles,Axel Visel,John L.R. Rubenstein +13 more
TL;DR: Insight is provided into how broadly expressed patterning TFs regulate the activity of small enhancer elements that drive gene expression in pallial protodomains that fate map to distinct cortical regions.
Journal ArticleDOI
Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate
Shanni N. Silberberg,Leila Taher,Susan Lindtner,Magnus Sandberg,Alexander Nord,Alexander Nord,Alexander Nord,Daniel Vogt,Gabriel L. McKinsey,Renée V. Hoch,Kartik Pattabiraman,Dongji Zhang,José Luis Ferran,Aleksandar Rajkovic,Olga Golonzhka,Carol Kim,Hongkui Zeng,Luis Puelles,Axel Visel,Axel Visel,Axel Visel,John L.R. Rubenstein +21 more
TL;DR: Stable transgenic mouse lines that express CreERT2 and GFP from ten different enhancer elements with activity in distinct domains within the embryonic basal ganglia are generated to elucidate novel molecular mechanisms that regulate region-specific enhancer activity in the developing brain.