N
Nico Lansu
Researcher at Utrecht University
Publications - 19
Citations - 879
Nico Lansu is an academic researcher from Utrecht University. The author has contributed to research in topics: Cancer & Gene. The author has an hindex of 10, co-authored 16 publications receiving 712 citations. Previous affiliations of Nico Lansu include American Academy of Arts and Sciences.
Papers
More filters
Journal ArticleDOI
Combined sequence-based and genetic mapping analysis of complex traits in outbred rats
Amelie Baud,Roel Hermsen,Victor Guryev,Pernilla Stridh,Delyth Graham,Martin W. McBride,Tatiana Foroud,Sophie Calderari,Margarita Diez,Johan Öckinger,Amennai Daniel Beyeen,Alan Gillett,Nada Abdelmagid,André Ortlieb Guerreiro-Cacais,Maja Jagodic,Jonatan Tuncel,Ulrika Norin,Elisabeth Beattie,N. Huynh,William H. Miller,Daniel L. Koller,Imranul Alam,Samreen Falak,Mary Osborne-Pellegrin,Esther Martínez-Membrives,Toni Cañete,Gloria Blázquez,Elia Vicens-Costa,Carme Mont-Cardona,Sira Díaz-Morán,Adolf Tobeña,Oliver Hummel,Diana Zelenika,Kathrin Saar,Giannino Patone,Anja Bauerfeind,M. T. Bihoreau,Matthias Heinig,Young-Ae Lee,Carola Rintisch,Herbert Schulz,D Wheeler,Kim C. Worley,Donna M. Muzny,Richard A. Gibbs,Mark Lathrop,Nico Lansu,Pim W. Toonen,Frans-Paul Ruzius,E. de Bruijn,Heidi Hauser,David J. Adams,Thomas M. Keane,Santosh S. Atanur,Timothy J. Aitman,Paul Flicek,Tomas Malinauskas,E Y Jones,Diana Ekman,R. Lopez-Aumatell,R. Lopez-Aumatell,Anna F. Dominiczak,Martina Johannesson,Rikard Holmdahl,Tomas Olsson,Dominique Gauguier,Norbert Hubner,Alberto Fernández-Teruel,Edwin Cuppen,Richard Mott,Jonathan Flint +70 more
TL;DR: It is shown that the extent and spatial pattern of variation in inbred rats differ substantially from those of inbred mice and that the genetic variants in orthologous genes rarely contribute to the same phenotype in both species.
Journal ArticleDOI
Primary Colorectal Cancers and Their Subsequent Hepatic Metastases Are Genetically Different: Implications for Selection of Patients for Targeted Treatment
Joost S.P. Vermaat,Isaac J. Nijman,Marco J. Koudijs,Frank L. Gerritse,Stefan Scherer,Michal Mokry,Wijnand Roessingh,Nico Lansu,Ewart de Bruijn,Richard van Hillegersberg,Paul J. van Diest,Edwin Cuppen,Emile E. Voest +12 more
TL;DR: The study indicates that the genetic characteristics of the hepatic metastases are different from those of the primary CRC tumor, and the choice of treatment in studies investigating targeted therapies should ideally be based on the genetic properties of the metastasis rather than on those ofThe primary tumor.
Journal ArticleDOI
Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain
Marit W. Vermunt,Peter Reinink,Jeroen Korving,Ewart de Bruijn,Paul M. Creyghton,Onur Basak,Geert Geeven,Pim W. Toonen,Nico Lansu,Charles Meunier,Sebastiaan van Heesch,Hans Clevers,Wouter de Laat,Edwin Cuppen,Menno P. Creyghton +14 more
TL;DR: This work surveys the epigenomic landscape of promoters and cis-regulatory elements in 136 regions of the adult human brain, identifying 83,553 promoter-distal H3K27ac-enriched regions showing global characteristics of brain enhancers and using these data to understand the relevance of noncoding genomic variations previously linked to Parkinson's disease incidence.
Journal ArticleDOI
Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing
Magdalena Harakalova,Michal Mokry,Barbara Hrdličková,Barbara Hrdličková,Ivo Renkens,Karen Duran,Henk van Roekel,Nico Lansu,Mark van Roosmalen,Ewart de Bruijn,Isaac J Nijman,Wigard P. Kloosterman,Edwin Cuppen,Edwin Cuppen +13 more
TL;DR: An efficient protocol for parallel library preparation and targeted enrichment of pooled multiplexed bar-coded samples for targeted resequencing of large sample collections, and whole-exome or custom mini-genome sequencing projects is presented.
Journal ArticleDOI
Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes
Michal Mokry,Pantelis Hatzis,Jurian Schuijers,Nico Lansu,Frans-Paul Ruzius,Hans Clevers,Edwin Cuppen +6 more
TL;DR: It is demonstrated that integrated analysis of genome-wide TF occupancy, Pol II binding and steady-state RNA levels provide important insights in gene regulatory mechanisms and demonstrate a complementary value in Pol II chip-seq and RNA-seq approaches for better understanding of gene expression regulation.