P
Patrick Wincker
Researcher at Université Paris-Saclay
Publications - 417
Citations - 89088
Patrick Wincker is an academic researcher from Université Paris-Saclay. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 108, co-authored 366 publications receiving 77726 citations. Previous affiliations of Patrick Wincker include University of Évry Val d'Essonne & French Alternative Energies and Atomic Energy Commission.
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Journal ArticleDOI
Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates
Benoit G. Godard,Marion Coolen,Marion Coolen,Sophie Le Panse,Aurélie Gombault,Susana Ferreiro-Galve,Susana Ferreiro-Galve,Laurent Laguerre,Ronan Lagadec,Patrick Wincker,Julie Poulain,Corinne Da Silva,Shigehiro Kuraku,Wilfried Carre,Agnès Boutet,Sylvie Mazan +15 more
TL;DR: Comparisons across vertebrates support the conclusion that endoderm is specified in two distinct temporal phases in the catshark as in all major osteichthyan lineages, in line with an ancient origin of a biphasic mode of endoderman specification in gnathostomes.
Journal ArticleDOI
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Fabien Lombard,Guillaume Bourdin,Stephane Pesant,Sylvain Agostini,Alberto Baudena,Emilie Boissin,Nicolas Cassar,Megan Clampitt,Pascal Conan,Ophélie Da Silva,Céline Dimier,Eric Douville,Amanda Elineau,Jonathan Fin,Juana M. Flores,Jean-François Ghiglione,Benjamin C. C. Hume,Laëtitia Jalabert,Seth G. John,Rachel L. Kelly,Ilan Koren,Yajuan Lin,Dominique Marie,Ryan McMinds,Zoé Mériguet,Nicolas Metzl,David A. Paz-García,Maria Luiza Pedrotti,Julie Poulain,Mireille Pujo-Pay,Josephine Ras,Gilles Reverdin,Sarah Romac,Alice Rouan,Eric Röttinger,Assaf Vardi,Christian R. Voolstra,Clémentine Moulin,Guillaume Iwankow,Bernard Banaigs,Chris Bowler,Colomban de Vargas,Didier Forcioli,Paola Furla,Pierre E. Galand,Eric Gilson,Stéphanie Reynaud,Shinichi Sunagawa,Matthew B. Sullivan,Olivier P. Thomas,Romain Troublé,Rebecca Vega Thurber,Patrick Wincker,Didier Zoccola,Denis Allemand,Serge Planes,Emmanuel Boss,Gabriel Gorsky +57 more
TL;DR: The Tara Pacific expedition (2016-2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples as discussed by the authors .
Journal ArticleDOI
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.
Christophe Djemiel,Samuel Dequiedt,Battle Karimi,Aurélien Cottin,Thibault Girier,Yassin El Djoudi,Patrick Wincker,Mélanie Lelievre,Samuel Mondy,Nicolas Chemidlin Prévost-Bouré,Pierre-Alain Maron,Lionel Ranjard,Sébastien Terrat +12 more
TL;DR: The BIOCOM-PIPE pipeline makes it possible to analyze 16S, 18S and 23S rRNA genes in the same packaged tool and defines a biological database from previously analyzed samples and performs post-clustering of reads with this reference database by using open-reference clustering.
Posted ContentDOI
Ecogenomics of key prokaryotes in the arctic ocean
Marta Royo-Llonch,Pablo Sánchez,Clara Ruiz-González,Guillem Salazar,Carlos Pedrós-Alió,Karine Labadie,Lucas Paoli,Samuel Chaffron,Damien Eveillard,Eric Karsenti,Shinichi Sunagawa,Patrick Wincker,Lee Karp-Boss,Chris Bowler,Silvia G. Acinas +14 more
TL;DR: This work reconstructed a total of 3,550 metagenomic bins from 41 seawater metagenomes collected as part of the Tara Oceans expedition, building the most comprehensive dataset of uncultured bacterial and archaeal genomes from the Arctic Ocean to date.
Journal ArticleDOI
The genomic history and global expansion of domestic donkeys
Evelyn T. Todd,Laure Tonasso-Calvière,Lorelei Chauvey,Stéphanie Schiavinato,Antoine Fages,Andaine Seguin-Orlando,Pierre Clavel,Naveed Khan,Lucía Pérez Pardal,Laura Patterson Rosa,Pablo Librado,Harald Ringbauer,Marta Pereira Verdugo,John Southon,Jean-Marc Aury,Aude C Perdereau,Emmanuelle Vila,Matilde Marzullo,Ornella Prato,Umberto Tecchiati,Giovanna Bagnasco Gianni,Antonio Tagliacozzo,V. Tiné,Francesca Alhaique,João Cardoso,Maria João Valente,Miguel Telles Antunes,Laurent A. F. Frantz,Beth Shapiro,Daniel G. Bradley,Nicolas Boulbes,Armelle Gardeisen,Liora Kolska Horwitz,Aliye Öztan,Benjamin S. Arbuckle,Vedat Onar,Benoît Clavel,Sébastien Lepetz,Ali Vahdati,Hossein Davoudi,Azadeh Fatemeh Mohaseb,Marjan Mashkour,Olivier Bouchez,Cécile Donnadieu,Patrick Wincker,Samantha A. Brooks,Albano Beja-Pereira,Dong-Dong Wu,Ludovic Orlando +48 more
TL;DR: A strong phylogeographic structure in modern donkeys is found that supports a single domestication in Africa ~5000 BCE, followed by further expansions in this continent and Eurasia and ultimately returning to Africa.