P
Patrick Wincker
Researcher at Université Paris-Saclay
Publications - 417
Citations - 89088
Patrick Wincker is an academic researcher from Université Paris-Saclay. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 108, co-authored 366 publications receiving 77726 citations. Previous affiliations of Patrick Wincker include University of Évry Val d'Essonne & French Alternative Energies and Atomic Energy Commission.
Papers
More filters
Journal ArticleDOI
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Simon Roux,Jennifer R. Brum,Bas E. Dutilh,Bas E. Dutilh,Bas E. Dutilh,Shinichi Sunagawa,Melissa B. Duhaime,Alexander Loy,Bonnie T. Poulos,Natalie Solonenko,Elena Lara,Elena Lara,Julie Poulain,Stephane Pesant,Stefanie Kandels-Lewis,Céline Dimier,Céline Dimier,Céline Dimier,Marc Picheral,Marc Picheral,Sarah Searson,Sarah Searson,Corinne Cruaud,Adriana Alberti,Carlos M. Duarte,Carlos M. Duarte,Josep M. Gasol,Dolors Vaqué,Peer Bork,Silvia G. Acinas,Patrick Wincker,Patrick Wincker,Mathew B. Sullivan +32 more
TL;DR: A global map of abundant, double-stranded DNA viruses complete with genomic and ecological contexts is presented to present a necessary foundation for the meaningful integration of viruses into ecosystem models where they act as key players in nutrient cycling and trophic networks.
Journal ArticleDOI
Plankton networks driving carbon export in the oligotrophic ocean.
Lionel Guidi,Samuel Chaffron,Lucie Bittner,Damien Eveillard,Abdelhalim Larhlimi,Simon Roux,Youssef Darzi,Stéphane Audic,Léo Berline,Jennifer R. Brum,Luis Pedro Coelho,Julio Cesar Ignacio Espinoza,Shruti Malviya,Shinichi Sunagawa,Céline Dimier,Stefanie Kandels-Lewis,Marc Picheral,Julie Poulain,Sarah Searson,Lars Stemmann,Fabrice Not,Pascal Hingamp,Sabrina Speich,Mick Follows,Lee Karp-Boss,Emmanuel Boss,Hiroyuki Ogata,Stephane Pesant,Jean Weissenbach,Patrick Wincker,Silvia G. Acinas,Peer Bork,Daniele Iudicone,Matthew B. Sullivan,Jeroen Raes,Eric Karsenti,Chris Bowler,Gabriel Gorsky +37 more
TL;DR: It is shown that specific plankton communities, from the surface and deep chlorophyll maximum, correlate with carbon export at 150 m and that the relative abundance of a few bacterial and viral genes can predict a significant fraction of the variability in carbon export in these regions.
Journal ArticleDOI
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.
Evgeny M. Zdobnov,Christian von Mering,Ivica Letunic,David Torrents,Mikita Suyama,Richard R. Copley,George K. Christophides,Dana Thomasova,Robert A. Holt,G. Mani Subramanian,Hans Michael Mueller,George Dimopoulos,John H. Law,Michael A. Wells,Ewan Birney,Rosane Charlab,Aaron L. Halpern,Kokoza Eb,Cheryl L. Kraft,Zhongwu Lai,Suzanna E. Lewis,Christos Louis,Carolina Barillas-Mury,Deborah Nusskern,Gerald M. Rubin,Steven L. Salzberg,Granger G. Sutton,Pantelis Topalis,Ron Wides,Patrick Wincker,Mark Yandell,Frank H. Collins,José M. C. Ribeiro,William M. Gelbart,Fotis C. Kafatos,Peer Bork +35 more
TL;DR: Aligned sequences reveal that orthologous genes have retained only half of their intron/exon structure, indicating that intron gains or losses have occurred at a rate of about one per gene per 125 million years, which indicates that these two insects diverged considerably faster than vertebrates.
Journal ArticleDOI
Structural and functional partitioning of bread wheat chromosome 3B.
Frédéric Choulet,Adriana Alberti,Sébastien Theil,Natasha Glover,Valérie Barbe,Josquin Daron,Lise Pingault,Pierre Sourdille,Arnaud Couloux,Etienne Paux,Philippe Leroy,Sophie Mangenot,Nicolas Guilhot,Jacques Le Gouis,François Balfourier,Michael Alaux,Véronique Jamilloux,Julie Poulain,Céline Durand,Arnaud Bellec,Christine Gaspin,Jan Safar,Jaroslav Dolezel,Jane Rogers,Klaas Vandepoele,Jean-Marc Aury,Klaus F. X. Mayer,Hélène Bergès,Hadi Quesneville,Patrick Wincker,Patrick Wincker,Patrick Wincker,Catherine Feuillet +32 more
TL;DR: The distribution of structural and functional features along the chromosome revealed partitioning correlated with meiotic recombination and high wheat-specific inter- and intrachromosomal gene duplication activities that are potential sources of variability for adaption.
Journal ArticleDOI
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
G Albert Wu,Simon E. Prochnik,Jerry Jenkins,Jérôme Salse,Uffe Hellsten,Florent Murat,Xavier Perrier,Manuel Ruiz,Simone Scalabrin,Javier Terol,Marco Aurélio Takita,Karine Labadie,Julie Poulain,Arnaud Couloux,Kamel Jabbari,Federica Cattonaro,Cristian Del Fabbro,Sara Pinosio,Andrea Zuccolo,Jarrod Chapman,Jane Grimwood,Francisco R. Tadeo,Leandro H. Estornell,Juan V. Munoz-Sanz,Victoria Ibanez,Amparo Herrero-Ortega,Pablo Aleza,Julián Pérez-Pérez,Daniel Ramón,Dominique Brunel,François Luro,Chunxian Chen,William G. Farmerie,Brian Desany,Chinnappa D. Kodira,Mohammed Mohiuddin,Tim Harkins,Karin M. Fredrikson,Paul Burns,Alexandre Lomsadze,Mark Borodovsky,Giuseppe Reforgiato,Juliana Freitas-Astúa,Francis Quetier,Luis Navarro,Mikeal L. Roose,Patrick Wincker,Jeremy Schmutz,Michele Morgante,Marcos A. Machado,Manuel Talon,Olivier Jaillon,Patrick Ollitrault,Frederick G. Gmitter,Daniel S. Rokhsar +54 more
TL;DR: This work sequence and compare citrus genomes—a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes—and shows that cultivated types derive from two progenitor species.