S
Sae Okazaki
Researcher at University of Tokyo
Publications - 9
Citations - 990
Sae Okazaki is an academic researcher from University of Tokyo. The author has contributed to research in topics: CRISPR & RNA. The author has an hindex of 4, co-authored 4 publications receiving 515 citations.
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Journal ArticleDOI
Engineered CRISPR-Cas9 nuclease with expanded targeting space
Hiroshi Nishimasu,Xi Shi,Xi Shi,Soh Ishiguro,Soh Ishiguro,Linyi Gao,Linyi Gao,Seiichi Hirano,Sae Okazaki,Taichi Noda,Omar O. Abudayyeh,Omar O. Abudayyeh,Omar O. Abudayyeh,Jonathan S. Gootenberg,Jonathan S. Gootenberg,Jonathan S. Gootenberg,Hideto Mori,Hideto Mori,Seiya Oura,Benjamin Ray Holmes,Benjamin Ray Holmes,Mamoru Tanaka,Motoaki Seki,Hisato Hirano,Hiroyuki Aburatani,Ryuichiro Ishitani,Masahito Ikawa,Masahito Ikawa,Nozomu Yachie,Feng Zhang,Osamu Nureki +30 more
TL;DR: A rationally engineered SpCas9 variant (SpCas9-NG) that can recognize relaxed NG PAMs is reported, which is a powerful addition to the CRISPR-Cas9 genome engineering toolbox and will be useful in a broad range of applications, from basic research to clinical therapeutics.
Journal ArticleDOI
Amplification-free RNA detection with CRISPR-Cas13.
Hajime Shinoda,Yuya Taguchi,Ryoya Nakagawa,Asami Makino,Sae Okazaki,Masahiro Nakano,Yukiko Muramoto,Chiharu Takahashi,Ikuko Takahashi,Jun Ando,Takeshi Noda,Osamu Nureki,Hiroshi Nishimasu,Rikiya Watanabe +13 more
TL;DR: In this paper, the authors developed a platform that allows "CRISPR-based amplification-free digital RNA detection (SATORI)" by combining CRISPRCas13-based RNA detection and microchamber-array technologies.
Journal ArticleDOI
Structure of the miniature type V-F CRISPR-Cas effector enzyme.
Satoru N. Takeda,Ryoya Nakagawa,Sae Okazaki,Hisato Hirano,Kan Kobayashi,Tsukasa Kusakizako,Tomohiro Nishizawa,Keitaro Yamashita,Hiroshi Nishimasu,Osamu Nureki +9 more
TL;DR: Cryo-electron microscopy structure of Cas12f1 (also known as Cas14a) in complex with a guide RNA and its target DNA revealed that two Cas 12f1 molecules assemble with the single guide RNA to recognize the double-stranded DNA target, thereby explaining how the miniature Cas12 f1 enzyme achieves RNA-guided DNA cleavage as an "asymmetric homodimer."
Journal ArticleDOI
Crystal structure of heliorhodopsin.
Wataru Shihoya,Keiichi Inoue,Manish Singh,Masae Konno,Shoko Hososhima,Keitaro Yamashita,Kento Ikeda,Akimitsu Higuchi,Tamaki Izume,Sae Okazaki,Masanori Hashimoto,Ritsu Mizutori,Sahoko Tomida,Yumeka Yamauchi,Rei Abe-Yoshizumi,Kota Katayama,Satoshi P. Tsunoda,Satoshi P. Tsunoda,Mikihiro Shibata,Yuji Furutani,Yuji Furutani,Yuji Furutani,Alina Pushkarev,Oded Béjà,Takayuki Uchihashi,Takayuki Uchihashi,Hideki Kandori,Osamu Nureki +27 more
TL;DR: The 2.4-Å-resolution structure of HeR from an uncultured Thermoplasmatales archaeon SG8-52-1 shows that it adopts a similar fold to that of type I rhodopsin—despite the low sequence identity—but there are also several marked differences that provide insights into heliorhodopin function.
Journal ArticleDOI
Structure and engineering of the type III-E CRISPR-Cas7-11 effector complex
Kazuki Kato,Wenyuan Zhou,Sae Okazaki,Yukari Isayama,Tomohiro Nishizawa,Jonathan S. Gootenberg,Omar O. Abudayyeh,Hiroshi Nishimasu +7 more
TL;DR: The type III-E CRISPR-Cas effector Cas7-11, with dual RNase activities for pre-crRNA processing and CRRNA-guided target RNA cleavage, is a new platform for bacterial and mammalian RNA targeting as discussed by the authors .