S
Sandra S. de Vries
Researcher at Utrecht University
Publications - 16
Citations - 1888
Sandra S. de Vries is an academic researcher from Utrecht University. The author has contributed to research in topics: Chromatin & DNA. The author has an hindex of 12, co-authored 16 publications receiving 1608 citations. Previous affiliations of Sandra S. de Vries include Netherlands Cancer Institute.
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Journal ArticleDOI
Single-Cell Dynamics of Genome-Nuclear Lamina Interactions
Jop Kind,Ludo Pagie,Havva Ortabozkoyun,Shelagh Boyle,Sandra S. de Vries,Hans Janssen,Mario Amendola,Leisha D. Nolen,Wendy A. Bickmore,Bas van Steensel +9 more
TL;DR: The H3K9 methyltransferase G9a is identified as a regulator of NL contacts and contact of individual LADs with the NL is linked to transcriptional repression and H 3K9 dimethylation in single cells.
Journal ArticleDOI
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
Jop Kind,Jop Kind,Ludo Pagie,Sandra S. de Vries,Leila Nahidiazar,Siddharth S. Dey,Magda Bienko,Ye Zhan,Bryan R. Lajoie,Carolyn A. de Graaf,Mario Amendola,Geoffrey Fudenberg,Maxim Imakaev,Leonid A. Mirny,Kees Jalink,Job Dekker,Alexander van Oudenaarden,Bas van Steensel +17 more
TL;DR: The consistency of NL contacts is inversely linked to gene activity in single cells and correlates positively with the heterochromatic histone modification H3K9me3, which highlights fundamental principles of single-cell chromatin organization.
Journal ArticleDOI
Complex interactions of new quantitative trait loci, Sluc1, Sluc2, Sluc3, and Sluc4, that influence the susceptibility to lung cancer in the mouse
TL;DR: QTL analysis of 222 F2 mice revealed four new loci that influence susceptibility to lung cancer (Sluc genes), indicating that interactions between tumour susceptibility genes are a common phenomenon which complicates their mapping.
Journal ArticleDOI
Role for Msh5 in the regulation of Ig class switch recombination.
Hideharu Sekine,Ricardo C. Ferreira,Qiang Pan-Hammarström,Robert R. Graham,Beth Ziemba,Sandra S. de Vries,Jiabin Liu,Keli L. Hippen,Thearith Koeuth,Ward Ortmann,Akiko Iwahori,Margaret K. Elliott,Steven M. Offer,Cara N. Skon,Likun Du,Jill Novitzke,Annette Lee,Nianxi Zhao,Joshua D. Tompkins,David Altshuler,Peter K. Gregersen,Charlotte Cunningham-Rundles,Reuben S. Harris,Chengtao Her,David L. Nelson,Lennart Hammarström,Gary S. Gilkeson,Timothy W. Behrens +27 more
TL;DR: The findings suggest that Msh4/5 heterodimers contribute to CSR and support a model whereby Msh 4/5 promotes the resolution of DNA breaks with low or no terminal microhomology by a classical nonhomologous end-joining mechanism while possibly suppressing an alternative microHomology-mediated pathway.
Journal ArticleDOI
Genome-lamina interactions are established de novo in the early mouse embryo.
Máté Borsos,Sara M. Perricone,Tamas Schauer,Julien Pontabry,Kim L. de Luca,Sandra S. de Vries,Elias R. Ruiz-Morales,Maria-Elena Torres-Padilla,Jop Kind +8 more
TL;DR: High-resolution maps of genomic interactions with the nuclear lamina in mouse pre-implantation embryos reveal that nuclear organization is not inherited from the maternal germline but is instead established de novo shortly after fertilization, suggesting a step-wise assembly model whereby early LAD formation precedes consolidation of topologically associating domains.