S
Steve Ndikumana
Researcher at University of Ottawa
Publications - 7
Citations - 1009
Steve Ndikumana is an academic researcher from University of Ottawa. The author has contributed to research in topics: Genome & Rhizophagus irregularis. The author has an hindex of 7, co-authored 7 publications receiving 789 citations.
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Journal ArticleDOI
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
Emilie Tisserant,Mathilde Malbreil,Alan Kuo,Annegret Kohler,Aikaterini Symeonidi,Aikaterini Symeonidi,Raffaella Balestrini,Philippe Charron,Nina Duensing,Nicolas Frei dit Frey,Vivienne Gianinazzi-Pearson,Luz B. Gilbert,Yoshihiro Handa,Joshua R. Herr,Mohamed Hijri,Raman Koul,Masayoshi Kawaguchi,Franziska Krajinski,Peter J. Lammers,Frédéric G. Masclaux,Claude Murat,Emmanuelle Morin,Steve Ndikumana,Marco Pagni,Denis Petitpierre,Natalia Requena,Pawel Rosikiewicz,Rohan Riley,Katsuharu Saito,Hélène San Clemente,Harris Shapiro,Diederik van Tuinen,Guillaume Bécard,Paola Bonfante,Uta Paszkowski,Yair Shachar-Hill,Gerald A. Tuskan,J. Peter W. Young,Ian R. Sanders,Bernard Henrissat,Bernard Henrissat,Stefan A. Rensing,Stefan A. Rensing,Igor V. Grigoriev,Nicolas Corradi,Christophe Roux,Francis Martin +46 more
TL;DR: The genome of Rhizophagus irregularis provides insight into genes involved in obligate biotrophy and mycorrhizal symbioses and the evolution of an ancient asexual organism, and is of fundamental importance to the field of genome evolution.
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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.
Eric C. H. Chen,Emmanuelle Morin,Denis Beaudet,Jessica Noël,Gokalp Yildirir,Steve Ndikumana,Philippe Charron,Camille St‐Onge,John M Giorgi,Manuela Krüger,Timea Marton,Jeanne Ropars,Igor V. Grigoriev,Matthieu Hainaut,Matthieu Hainaut,Bernard Henrissat,Bernard Henrissat,Bernard Henrissat,Christophe Roux,Francis Martin,Nicolas Corradi +20 more
TL;DR: Overall, these findings indicate a substantial divergence in the functioning capacity of isolates harvested from the same field, and thus their genetic potential for adaptation to biotic and abiotic changes.
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Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
Emmanuelle Morin,Shingo Miyauchi,Hélène San Clemente,Eric C. H. Chen,Adrian Pelin,Ivan de la Providencia,Steve Ndikumana,Denis Beaudet,Mathieu Hainaut,Elodie Drula,Alan Kuo,Nianwu Tang,Sébastien Roy,Julie Viala,Bernard Henrissat,Igor V. Grigoriev,Nicolas Corradi,Christophe Roux,Francis Martin +18 more
TL;DR: The high interspecific diversity of Glomeromycotina gene repertoires, affecting all known protein domains, as well as symbiosis-related orphan genes, may explain the known adaptation of Glomerales and Diversisporales to a wide range of environmental settings.
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Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi.
Eric C. H. Chen,Stephanie Mathieu,Anne Hoffrichter,Kinga Sedzielewska-Toro,Max Peart,Adrian Pelin,Steve Ndikumana,Jeanne Ropars,Steven Dreissig,Jörg Fuchs,Andreas Brachmann,Nicolas Corradi +11 more
TL;DR: It is demonstrated that AMF can generate genetic diversity via meiotic-like processes in the absence of observable mating, highlighting its potential for strain enhancement of these symbionts.
Journal ArticleDOI
Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi.
Denis Beaudet,Eric C. H. Chen,Stephanie Mathieu,Gokalp Yildirir,Steve Ndikumana,Yolande Dalpé,Sylvie Séguin,Laurent Farinelli,Jason E. Stajich,Nicolas Corradi +9 more
TL;DR: This work provides primary large-scale transcriptome data from eight poorly studied Arbuscular mycorrhizal fungi species using ultra-low input ribonucleic acid (RNA)-seq approaches and demonstrates that RNA-seq data obtained from low-input RNA are reliable in comparison to conventionalRNA-seq experiments.