G
Gerald A. Tuskan
Researcher at Oak Ridge National Laboratory
Publications - 336
Citations - 29967
Gerald A. Tuskan is an academic researcher from Oak Ridge National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 73, co-authored 313 publications receiving 25192 citations. Previous affiliations of Gerald A. Tuskan include United States Department of Energy & Oregon State University.
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Journal ArticleDOI
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan,Gerald A. Tuskan,Stephen P. DiFazio,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,John M. Davis,Sven Degroeve,Annabelle Déjardin,Claude W. dePamphilis,John C. Detter,Bill Dirks,Inna Dubchak,Inna Dubchak,Sébastien Duplessis,Jürgen Ehlting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Yrjö Helariutta,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,C D Nelson,Kaisa Nieminen,Ove Nilsson,V. Pereda,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson,Cécile Rinaldi,Kermit Ritland,Pierre Rouzé,D. Ryaboy,Jeremy Schmutz,J. Schrader,Bo Segerman,H. Shin,Asim Siddiqui,Fredrik Sterky,Astrid Terry,Chung-Jui Tsai,Edward C. Uberbacher,Per Unneberg,Jorma Vahala,Kerr Wall,Susan R. Wessler,Guojun Yang,T. Yin,Carl J. Douglas,Marco A. Marra,Göran Sandberg,Y. Van de Peer,Daniel S. Rokhsar,Daniel S. Rokhsar +115 more
TL;DR: The draft genome of the black cottonwood tree, Populus trichocarpa, has been reported in this paper, with more than 45,000 putative protein-coding genes identified.
Journal ArticleDOI
Lignin valorization: improving lignin processing in the biorefinery.
Arthur J. Ragauskas,Gregg T. Beckham,Mary J. Biddy,Richard P. Chandra,Fang Chen,Mark F. Davis,Brian H. Davison,Richard A. Dixon,Paul Gilna,Martin Keller,Paul Langan,Amit K. Naskar,John N. Saddler,Timothy J. Tschaplinski,Gerald A. Tuskan,Charles E. Wyman +15 more
TL;DR: Recent developments in genetic engineering, enhanced extraction methods, and a deeper understanding of the structure of lignin are yielding promising opportunities for efficient conversion of this renewable resource to carbon fibers, polymers, commodity chemicals, and fuels.
Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
Francis Martin,Andrea Aerts,Dag Ahrén,Annick Brun,Etienne Danchin,Frédéric Duchaussoy,Julien Gibon,Annegret Kohler,Erika Lindquist,V. Pereda,Asaf Salamov,Harris Shapiro,Jan Wuyts,Damien Blaudez,Marc Buée,Peter Brokstein,Björn Canbäck,David E. Cohen,Pierre-Emmanuel Courty,Pedro M. Coutinho,Christine Delaruelle,John C. Detter,Aurélie Deveau,Stephen P. DiFazio,Sébastien Duplessis,Laurence Fraissinet-Tachet,E. Lucic,Pascale Frey-Klett,C. Fourrey,Ivo Feussner,Jane Grimwood,Patrik J. Hoegger,Preti Jain,Sreedhar Kilaru,Jessy Labbé,Yao-Cheng Lin,Valérie Legué,F. Le Tacon,Roland Marmeisse,Delphine Melayah,Barbara Montanini,Michael Muratet,Uwe Nehls,Hélène Niculita-Hirzel,M. P. Oudot-Le Secq,Martina Peter,Hadi Quesneville,Balaji Rajashekar,Marlis Reich,Nicolas Rouhier,Jeremy Schmutz,T. Yin,Michel Chalot,Bernard Henrissat,Ursula Kües,Susan Lucas,Y. Van de Peer,Gopi K. Podila,Andrea Polle,Patricia J. Pukkila,Paul G. Richardson,Pierre Rouzé,Ian R. Sanders,Jason E. Stajich,Anders Tunlid,Gerald A. Tuskan,Igor V. Grigoriev +66 more
TL;DR: The predicted gene inventory of the L. bicolor genome points to previously unknown mechanisms of symbiosis operating in biotrophic mycorrhizal fungi, providing an unparalleled opportunity to develop a deeper understanding of the processes by which symbionts interact with plants within their ecosystem to perform vital functions in the carbon and nitrogen cycles that are fundamental to sustainable plant productivity.
Journal ArticleDOI
Reference genome sequence of the model plant Setaria
Jeffrey L. Bennetzen,Jeremy Schmutz,Hao Wang,Ryan Percifield,Ryan Percifield,Jennifer S. Hawkins,Jennifer S. Hawkins,Ana Clara Pontaroli,Ana Clara Pontaroli,Matt C. Estep,Matt C. Estep,Liang Feng,Justin N. Vaughn,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Erika Lindquist,Uffe Hellsten,Shweta Deshpande,Xuewen Wang,Xiaomei Wu,Xiaomei Wu,Therese Mitros,Jimmy K. Triplett,Jimmy K. Triplett,Xiaohan Yang,Chu-Yu Ye,Margarita Mauro-Herrera,Lin Wang,Pinghua Li,Manoj Sharma,Rita Sharma,Pamela C. Ronald,Olivier Panaud,Elizabeth A. Kellogg,Thomas P. Brutnell,Thomas P. Brutnell,Andrew N. Doust,Gerald A. Tuskan,Daniel S. Rokhsar,Katrien M. Devos +40 more
TL;DR: A high-quality reference genome sequence for foxtail millet (Setaria italica) is generated and regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion are identified.