S
Susmita Shrivastava
Researcher at J. Craig Venter Institute
Publications - 27
Citations - 1745
Susmita Shrivastava is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 17, co-authored 27 publications receiving 1505 citations. Previous affiliations of Susmita Shrivastava include University of Maryland, Baltimore & Boston Children's Hospital.
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Journal ArticleDOI
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Naomi L. Ward,Jean F. Challacombe,Jean F. Challacombe,Peter H. Janssen,Peter H. Janssen,Bernard Henrissat,Pedro M. Coutinho,Martin Wu,Gary Xie,Gary Xie,Daniel H. Haft,Michelle Sait,Jonathan H. Badger,Ravi D. Barabote,Ravi D. Barabote,Brent Bradley,Thomas Brettin,Thomas Brettin,Lauren M. Brinkac,David Bruce,David Bruce,Todd Creasy,Sean C. Daugherty,Tanja M. Davidsen,Robert T. DeBoy,J. Chris Detter,J. Chris Detter,Robert J. Dodson,A. Scott Durkin,Anuradha Ganapathy,Michelle Gwinn-Giglio,Cliff Han,Cliff Han,Hoda Khouri,Hajnalka Kiss,Hajnalka Kiss,Sagar Kothari,Ramana Madupu,Karen E. Nelson,William C. Nelson,Ian T. Paulsen,Kevin Penn,Qinghu Ren,M. J. Rosovitz,Jeremy D. Selengut,Susmita Shrivastava,Steven A. Sullivan,Roxanne Tapia,Roxanne Tapia,L. Sue Thompson,L. Sue Thompson,Kisha Watkins,Qi Yang,Chunhui Yu,Nikhat Zafar,Liwei Zhou,Cheryl R. Kuske +56 more
TL;DR: Combining the genomic evidence with available culture traits, it is postulate that cells of these isolates are long-lived, divide slowly, exhibit slow metabolic rates under low-nutrient conditions, and are well equipped to tolerate fluctuations in soil hydration.
Journal ArticleDOI
Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice
Derrick E. Fouts,Heather L. Tyler,Robert T. DeBoy,Sean C. Daugherty,Qinghu Ren,Jonathan H. Badger,Anthony S. Durkin,Heather Huot,Susmita Shrivastava,Sagar Kothari,Robert J. Dodson,Yasmin Ali Mohamoud,Hoda Khouri,Luiz Fernando Wurdig Roesch,Karen A. Krogfelt,Carsten Struve,Eric W. Triplett,Barbara A. Methé +17 more
TL;DR: The sequencing and analysis of the genome of the nitrogen-fixing endophyte, Klebsiella pneumoniae 342, will drive new research into this less-understood, but important category of bacterial-plant host relationships, which could ultimately enhance growth and nutrition of important agricultural crops and development of plant-derived products and biofuels.
Journal ArticleDOI
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens
Carla Risso,Jun Sun,Kai Zhuang,Radhakrishnan Mahadevan,Robert T. DeBoy,Wael Ismail,Susmita Shrivastava,Heather Huot,Heather Huot,Sagar Kothari,Sean C. Daugherty,Sean C. Daugherty,Olivia Bui,Christophe H. Schilling,Derek R. Lovley,Barbara A. Methé +15 more
TL;DR: This study demonstrates that combining genome-scale modeling with the annotation of a new genome sequence can guide experimental studies and accelerate the understanding of the physiology of under-studied yet environmentally relevant microorganisms.
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Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains
Vanya Paralanov,Jin Lu,Lynn B. Duffy,Donna M. Crabb,Susmita Shrivastava,Barbara A. Methé,Jason M. Inman,Shibu Yooseph,Li Xiao,Gail H. Cassell,Ken B. Waites,John I. Glass +11 more
TL;DR: Comparative genome analysis suggests UUR is more capable of acquiring genes horizontally, which may contribute to its greater virulence for some conditions and indicates that ureaplasmas exist as quasi-species rather than as stable serovars in their native environment.
Journal ArticleDOI
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene
Seth A. Schobel,Seth A. Schobel,Karla M. Stucker,Martin L. Moore,Larry J. Anderson,Emma K. Larkin,Jyoti Shankar,Jayati Bera,Vinita Puri,Meghan H. Shilts,Christian Rosas-Salazar,Rebecca A. Halpin,Nadia Fedorova,Susmita Shrivastava,Timothy B. Stockwell,R. Stokes Peebles,Tina V. Hartert,Suman R. Das +17 more
TL;DR: Evidence of convergent evolution of G gene sequence duplication and fixation over time suggests a potential fitness advantage of RSV with the G sequence duplication, and identifies multiple co-circulating clades ofRSV from both the A and B groups.