T
Takashi Matsumoto
Researcher at Rice University
Publications - 22
Citations - 5177
Takashi Matsumoto is an academic researcher from Rice University. The author has contributed to research in topics: Genome & Musa balbisiana. The author has an hindex of 15, co-authored 22 publications receiving 4900 citations. Previous affiliations of Takashi Matsumoto include Yokohama City University & National Agriculture and Food Research Organization.
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Journal ArticleDOI
The map-based sequence of the rice genome
Takashi Matsumoto,Jianzhong Wu,Hiroyuki Kanamori,Yuichi Katayose,Masaki Fujisawa,Nobukazu Namiki,Hiroshi Mizuno,Kimiko Yamamoto,Baltazar A. Antonio,Tomoya Baba,Katsumi Sakata,Yoshiaki Nagamura,Hiroyoshi Aoki,Koji Arikawa,Kohei Arita,Takahito Bito,Yoshino Chiden,Nahoko Fujitsuka,Rie Fukunaka,Masao Hamada,Chizuko Harada,Akiko Hayashi,Saori Hijishita,Mikiko Honda,Satomi Hosokawa,Yoko Ichikawa,Atsuko Idonuma,Masumi Iijima,Michiko Ikeda,Maiko Ikeno,Kazue Ito,Sachie Ito,Tomoko Ito,Yuichi Ito,Yukiyo Ito,Aki Iwabuchi,Kozue Kamiya,Wataru Karasawa,Kanako Kurita,Satoshi Katagiri,Ari Kikuta,Harumi Kobayashi,Noriko Kobayashi,Kayo Machita,Tomoko Maehara,Masatoshi Masukawa,Tatsumi Mizubayashi,Yoshiyuki Mukai,Hideki Nagasaki,Yuko Nagata,Shinji Naito,Marina Nakashima,Yuko Nakama,Yumi Nakamichi,Mari Nakamura,Ayano Meguro,Manami Negishi,Isamu Ohta,Tomoya Ohta,Masako Okamoto,Nozomi Ono,Shoko Saji,Miyuki Sakaguchi,Kumiko Sakai,Michie Shibata,Takanori Shimokawa,Jianyu Song,Yuka Takazaki,Kimihiro Terasawa,Mika Tsugane,Kumiko Tsuji,Shigenori Ueda,Kazunori Waki,Harumi Yamagata,Mayu Yamamoto,Shinichi Yamamoto,Hiroko Yamane,Shoji Yoshiki,Rie Yoshihara,Kazuko Yukawa,Huisun Zhong,Masahiro Yano,Takuji Sasaki,Qiaoping Yuan,Shu Ouyang,Jia Liu,Kristine Jones,Kristen Gansberger,Kelly Moffat,Jessica Hill,Jayati Bera,Douglas Fadrosh,Shaohua Jin,Shivani Johri,Mary Kim,Larry Overton,Matthew Reardon,Tamara Tsitrin,Hue Vuong,Bruce Weaver,Anne Ciecko,Luke J. Tallon,Jacqueline Jackson,Grace Pai,Susan Van Aken,T. Utterback,Steve Reidmuller,Tamara Feldblyum,Joseph Hsiao,Victoria Zismann,Stacey E. Iobst,Aymeric R. De Vazeille,C. Robin Buell,Kai Ying,Ying Li,Tingting Lu,Y. Huang,Qiang Zhao,Qi Feng,Lei Zhang,Jingjie Zhu,Qijun Weng,Jie Mu,Yiqi Lu,Danlin Fan,Yilei Liu,Jianping Guan,Yujun Zhang,Shuliang Yu,Xiaohui Liu,Yu Zhang,Guofan Hong,Bin Han,Nathalie Choisne,Nadia Demange,Gisela Orjeda,Sylvie Samain,Laurence Cattolico,Eric Pelletier,Arnaud Couloux,Béatrice Segurens,Patrick Wincker,Angélique D'Hont,Claude Scarpelli,Jean Weissenbach,Marcel Salanoubat,Francis Quetier,Yeisoo Yu,Hyeran Kim,Teri Rambo,Jennifer Currie,Kristi Collura,Meizhong Luo,Tae-Jin Yang,Jetty S.S. Ammiraju,Friedrich Engler,Carol Soderlund,Rod A. Wing,Lance E. Palmer,Melissa De La Bastide,Lori Spiegel,Lidia Nascimento,Theresa Zutavern,A. O'Shaughnessy,Sujit Dike,Neilay Dedhia,R. Preston,Vivekanand Balija,W. Richard McCombie,Teh Yuan Chow,Hong-Hwa Chen,Mei-Chu Chung,Ching San Chen,J. F. Shaw,Hong Pang Wu,Kwang-Jen Hsiao,Ya Ting Chao,Mu Kuei Chu,Chia Hsiung Cheng,Ai Ling Hour,Pei Fang Lee,Shu Jen Lin,Yao-Cheng Lin,John Yu Liou,Shu Mei Liu,Yue-Ie C. Hsing,Saurabh Raghuvanshi,Amitabh Mohanty,Arvind K. Bharti,Arvind K. Bharti,Anupama Gaur,Vipin Gupta,Dibyendu Kumar,Vydianathan Ravi,Shubha Vij,Anita Kapur,Parul Khurana,Paramjit Khurana,Jitendra P. Khurana,Akhilesh K. Tyagi,Kishor Gaikwad,Alok Singh,Vivek Dalal,Subodh K. Srivastava,Anupam Dixit,Ajit K. Pal,Irfan Ahmad Ghazi,Mahavir Yadav,A. Pandit,Atul Bhargava,K. Sureshbabu,Kamlesh Batra,Tilak Raj Sharma,Trilochan Mohapatra,Nagendra K. Singh,Joachim Messing,Amy Bronzino Nelson,Galina Fuks,Steve Kavchok,Gladys Keizer,Eric Linton Victor Llaca,Rentao Song,Bahattin Tanyolac,Steve Young,Kim Yul Ho,Jang Ho Hahn,G. Sangsakoo,Apichart Vanavichit,Luiz Anderson Teixeira de Mattos,Paulo Dejalma Zimmer,Gaspar Malone,Odir Antônio Dellagostin,Antonio Costa de Oliveira,Michael W. Bevan,Ian Bancroft,Patrick Minx,Holly Cordum,Richard K. Wilson,Zhukuan Cheng,Weiwei Jin,Jiming Jiang,Sally A. Leong,Hisakazu Iwama,Takashi Gojobori,Takeshi Itoh,Takeshi Itoh,Yoshihito Niimura,Yasuyuki Fujii,Takuya Habara,Hiroaki Sakai,Hiroaki Sakai,Yoshiharu Sato,Gregory Wilson,Kiran Kumar,Susan R. McCouch,Nikoleta Juretic,Douglas R. Hoen,Stephen I. Wright,Richard Bruskiewich,Thomas E. Bureau,Akio Miyao,Hirohiko Hirochika,Tomotaro Nishikawa,Koh Ichi Kadowaki,Masahiro Sugiura,Benjamin Burr +265 more
TL;DR: A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Journal ArticleDOI
The genome sequence and structure of rice chromosome 1
Takuji Sasaki,Takashi Matsumoto,Kimiko Yamamoto,Katsumi Sakata,Tomoya Baba,Yuichi Katayose,Jianzhong Wu,Yoshihito Niimura,Zhukuan Cheng,Yoshiaki Nagamura,Baltazar A. Antonio,Hiroyuki Kanamori,Satomi Hosokawa,Masatoshi Masukawa,Koji Arikawa,Yoshino Chiden,Mika Hayashi,Masako Okamoto,Tsuyu Ando,Hiroyoshi Aoki,Kohei Arita,Masao Hamada,Chizuko Harada,Saori Hijishita,Mikiko Honda,Yoko Ichikawa,Atsuko Idonuma,Masumi Iijima,Michiko Ikeda,Maiko Ikeno,Sachie Ito,Tomoko Ito,Yuichi Ito,Yukiyo Ito,Aki Iwabuchi,Kozue Kamiya,Wataru Karasawa,Satoshi Katagiri,Ari Kikuta,Noriko Kobayashi,Izumi Kono,Kayo Machita,Tomoko Maehara,Hiroshi Mizuno,Tatsumi Mizubayashi,Yoshiyuki Mukai,Hideki Nagasaki,Marina Nakashima,Yuko Nakama,Yumi Nakamichi,Mari Nakamura,Nobukazu Namiki,Manami Negishi,Isamu Ohta,Nozomi Ono,Shoko Saji,Kumiko Sakai,Michie Shibata,Takanori Shimokawa,Ayahiko Shomura,Jianyu Song,Yuka Takazaki,Kimihiro Terasawa,Kumiko Tsuji,Kazunori Waki,Harumi Yamagata,Hiroko Yamane,Shoji Yoshiki,Rie Yoshihara,Kazuko Yukawa,Huisun Zhong,Hisakazu Iwama,Toshinori Endo,Hidetaka Ito,Jang Ho Hahn,Ho-Il Kim,Moo-Young Eun,Masahiro Yano,Jiming Jiang,Takashi Gojobori +79 more
TL;DR: The essentially complete sequence of chromosome 1, the longest chromosome in the rice genome, is reported and characteristics of the chromosome structure and the biological insight gained from the sequence are summarized.
Journal ArticleDOI
A Comprehensive Rice Transcript Map Containing 6591 Expressed Sequence Tag Sites
Jianzhong Wu,Tomoko Maehara,Takanori Shimokawa,Shinichi Yamamoto,Chizuko Harada,Yuka Takazaki,Nozomi Ono,Yoshiyuki Mukai,Kazuhiro Koike,Jyunshi Yazaki,Fumiko Fujii,Ayahiko Shomura,Tsuyu Ando,Izumi Kono,Kazunori Waki,Kimiko Yamamoto,Masahiro Yano,Takashi Matsumoto,Takuji Sasaki +18 more
TL;DR: The establishment of a comprehensive YAC-based rice transcript map that contains 6591 EST sites and covers 80.8% of the rice genome is described and should become an important tool for comparative analysis of chromosome structure and evolution among the cereals.
Journal ArticleDOI
Physical maps and recombination frequency of six rice chromosomes.
Jianzhong Wu,Hiroshi Mizuno,Mika Hayashi-Tsugane,Yukiyo Ito,Yoshino Chiden,Masaki Fujisawa,Satoshi Katagiri,Shoko Saji,Shoji Yoshiki,Wataru Karasawa,Rie Yoshihara,Akiko Hayashi,Harumi Kobayashi,Kazue Ito,Masao Hamada,Masako Okamoto,Maiko Ikeno,Yoko Ichikawa,Yuichi Katayose,Masahiro Yano,Takashi Matsumoto,Takuji Sasaki +21 more
TL;DR: Sequence analysis of regions of centromere core and surrounding regions suggests that either the amount or the organization patterns of repetitive sequences may play a role in the inactivation of recombination.
Journal ArticleDOI
Composition and Structure of the Centromeric Region of Rice Chromosome 8
Jianzhong Wu,Harumi Yamagata,Mika Hayashi-Tsugane,Saori Hijishita,Masaki Fujisawa,Michie Shibata,Yukiyo Ito,Mari Nakamura,Miyuki Sakaguchi,Rie Yoshihara,Harumi Kobayashi,Kazue Ito,Wataru Karasawa,Mayu Yamamoto,Shoko Saji,Satoshi Katagiri,Hiroyuki Kanamori,Nobukazu Namiki,Yuichi Katayose,Takashi Matsumoto,Takuji Sasaki +20 more
TL;DR: This study provides the complete sequence of a centromeric region from either plants or animals and likely will provide insight into the evolutionary and functional analysis of plant centromeres.