J
Jetty S.S. Ammiraju
Researcher at University of Arizona
Publications - 38
Citations - 6873
Jetty S.S. Ammiraju is an academic researcher from University of Arizona. The author has contributed to research in topics: Genome & Oryza. The author has an hindex of 25, co-authored 38 publications receiving 6298 citations. Previous affiliations of Jetty S.S. Ammiraju include National Chemical Laboratory & University of California, Riverside.
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Journal ArticleDOI
The map-based sequence of the rice genome
Takashi Matsumoto,Jianzhong Wu,Hiroyuki Kanamori,Yuichi Katayose,Masaki Fujisawa,Nobukazu Namiki,Hiroshi Mizuno,Kimiko Yamamoto,Baltazar A. Antonio,Tomoya Baba,Katsumi Sakata,Yoshiaki Nagamura,Hiroyoshi Aoki,Koji Arikawa,Kohei Arita,Takahito Bito,Yoshino Chiden,Nahoko Fujitsuka,Rie Fukunaka,Masao Hamada,Chizuko Harada,Akiko Hayashi,Saori Hijishita,Mikiko Honda,Satomi Hosokawa,Yoko Ichikawa,Atsuko Idonuma,Masumi Iijima,Michiko Ikeda,Maiko Ikeno,Kazue Ito,Sachie Ito,Tomoko Ito,Yuichi Ito,Yukiyo Ito,Aki Iwabuchi,Kozue Kamiya,Wataru Karasawa,Kanako Kurita,Satoshi Katagiri,Ari Kikuta,Harumi Kobayashi,Noriko Kobayashi,Kayo Machita,Tomoko Maehara,Masatoshi Masukawa,Tatsumi Mizubayashi,Yoshiyuki Mukai,Hideki Nagasaki,Yuko Nagata,Shinji Naito,Marina Nakashima,Yuko Nakama,Yumi Nakamichi,Mari Nakamura,Ayano Meguro,Manami Negishi,Isamu Ohta,Tomoya Ohta,Masako Okamoto,Nozomi Ono,Shoko Saji,Miyuki Sakaguchi,Kumiko Sakai,Michie Shibata,Takanori Shimokawa,Jianyu Song,Yuka Takazaki,Kimihiro Terasawa,Mika Tsugane,Kumiko Tsuji,Shigenori Ueda,Kazunori Waki,Harumi Yamagata,Mayu Yamamoto,Shinichi Yamamoto,Hiroko Yamane,Shoji Yoshiki,Rie Yoshihara,Kazuko Yukawa,Huisun Zhong,Masahiro Yano,Takuji Sasaki,Qiaoping Yuan,Shu Ouyang,Jia Liu,Kristine Jones,Kristen Gansberger,Kelly Moffat,Jessica Hill,Jayati Bera,Douglas Fadrosh,Shaohua Jin,Shivani Johri,Mary Kim,Larry Overton,Matthew Reardon,Tamara Tsitrin,Hue Vuong,Bruce Weaver,Anne Ciecko,Luke J. Tallon,Jacqueline Jackson,Grace Pai,Susan Van Aken,T. Utterback,Steve Reidmuller,Tamara Feldblyum,Joseph Hsiao,Victoria Zismann,Stacey E. Iobst,Aymeric R. De Vazeille,C. Robin Buell,Kai Ying,Ying Li,Tingting Lu,Y. Huang,Qiang Zhao,Qi Feng,Lei Zhang,Jingjie Zhu,Qijun Weng,Jie Mu,Yiqi Lu,Danlin Fan,Yilei Liu,Jianping Guan,Yujun Zhang,Shuliang Yu,Xiaohui Liu,Yu Zhang,Guofan Hong,Bin Han,Nathalie Choisne,Nadia Demange,Gisela Orjeda,Sylvie Samain,Laurence Cattolico,Eric Pelletier,Arnaud Couloux,Béatrice Segurens,Patrick Wincker,Angélique D'Hont,Claude Scarpelli,Jean Weissenbach,Marcel Salanoubat,Francis Quetier,Yeisoo Yu,Hyeran Kim,Teri Rambo,Jennifer Currie,Kristi Collura,Meizhong Luo,Tae-Jin Yang,Jetty S.S. Ammiraju,Friedrich Engler,Carol Soderlund,Rod A. Wing,Lance E. Palmer,Melissa De La Bastide,Lori Spiegel,Lidia Nascimento,Theresa Zutavern,A. O'Shaughnessy,Sujit Dike,Neilay Dedhia,R. Preston,Vivekanand Balija,W. Richard McCombie,Teh Yuan Chow,Hong-Hwa Chen,Mei-Chu Chung,Ching San Chen,J. F. Shaw,Hong Pang Wu,Kwang-Jen Hsiao,Ya Ting Chao,Mu Kuei Chu,Chia Hsiung Cheng,Ai Ling Hour,Pei Fang Lee,Shu Jen Lin,Yao-Cheng Lin,John Yu Liou,Shu Mei Liu,Yue-Ie C. Hsing,Saurabh Raghuvanshi,Amitabh Mohanty,Arvind K. Bharti,Arvind K. Bharti,Anupama Gaur,Vipin Gupta,Dibyendu Kumar,Vydianathan Ravi,Shubha Vij,Anita Kapur,Parul Khurana,Paramjit Khurana,Jitendra P. Khurana,Akhilesh K. Tyagi,Kishor Gaikwad,Alok Singh,Vivek Dalal,Subodh K. Srivastava,Anupam Dixit,Ajit K. Pal,Irfan Ahmad Ghazi,Mahavir Yadav,A. Pandit,Atul Bhargava,K. Sureshbabu,Kamlesh Batra,Tilak Raj Sharma,Trilochan Mohapatra,Nagendra K. Singh,Joachim Messing,Amy Bronzino Nelson,Galina Fuks,Steve Kavchok,Gladys Keizer,Eric Linton Victor Llaca,Rentao Song,Bahattin Tanyolac,Steve Young,Kim Yul Ho,Jang Ho Hahn,G. Sangsakoo,Apichart Vanavichit,Luiz Anderson Teixeira de Mattos,Paulo Dejalma Zimmer,Gaspar Malone,Odir Antônio Dellagostin,Antonio Costa de Oliveira,Michael W. Bevan,Ian Bancroft,Patrick Minx,Holly Cordum,Richard K. Wilson,Zhukuan Cheng,Weiwei Jin,Jiming Jiang,Sally A. Leong,Hisakazu Iwama,Takashi Gojobori,Takeshi Itoh,Takeshi Itoh,Yoshihito Niimura,Yasuyuki Fujii,Takuya Habara,Hiroaki Sakai,Hiroaki Sakai,Yoshiharu Sato,Gregory Wilson,Kiran Kumar,Susan R. McCouch,Nikoleta Juretic,Douglas R. Hoen,Stephen I. Wright,Richard Bruskiewich,Thomas E. Bureau,Akio Miyao,Hirohiko Hirochika,Tomotaro Nishikawa,Koh Ichi Kadowaki,Masahiro Sugiura,Benjamin Burr +265 more
TL;DR: A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Journal ArticleDOI
The genome of Theobroma cacao
Xavier Argout,Jérôme Salse,Jean-Marc Aury,Jean-Marc Aury,Jean-Marc Aury,Mark J. Guiltinan,Gaëtan Droc,Jérôme Gouzy,Mathilde Allègre,Cristian Chaparro,Thierry Legavre,Siela N. Maximova,Michael Abrouk,Florent Murat,Olivier Fouet,Julie Poulain,Julie Poulain,Julie Poulain,Manuel Ruiz,Yolande Roguet,Maguy Rodier-Goud,Jose Fernandes Barbosa-Neto,François Sabot,Dave Kudrna,Jetty S.S. Ammiraju,Stephan C. Schuster,John E. Carlson,John E. Carlson,Erika Sallet,Thomas Schiex,Anne Dievart,Melissa Kramer,Laura Gelley,Zi Shi,Aurélie Bérard,Christopher Viot,Michel Boccara,Ange-Marie Risterucci,Valentin Guignon,Xavier Sabau,Michael J. Axtell,Zhaorong Ma,Yufan Zhang,Yufan Zhang,Spencer Brown,Mickael Bourge,Wolfgang Golser,Xiang Song,Didier Clément,Ronan Rivallan,Mathias Tahi,Joseph Moroh Akaza,Bertrand Pitollat,Karina Peres Gramacho,Angélique D'Hont,Dominique Brunel,Diógenes Infante,Ismael S. Kébé,Pierre Costet,Rod A. Wing,W. Richard McCombie,Emmanuel Guiderdoni,Francis Quetier,Olivier Panaud,Patrick Wincker,Patrick Wincker,Patrick Wincker,Stéphanie Bocs,Claire Lanaud +68 more
TL;DR: This work sequenced and assembled the draft genome of Theobroma cacao, an economically important tropical-fruit tree crop that is the source of chocolate, and proposed an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions.
Journal ArticleDOI
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
Joshua C. Stein,Yeisoo Yu,Dario Copetti,Dario Copetti,Derrick J. Zwickl,Li Zhang,Chengjun Zhang,Kapeel Chougule,Kapeel Chougule,Dongying Gao,Aiko Iwata,Jose Luis Goicoechea,Sharon Wei,Jun Wang,Yi Liao,Muhua Wang,Muhua Wang,Julie Jacquemin,Julie Jacquemin,Claude Becker,Dave Kudrna,Jianwei Zhang,Carlos E.M. Londono,Xiang Song,Seunghee Lee,Paul L. Sanchez,Paul L. Sanchez,Andrea Zuccolo,Andrea Zuccolo,Jetty S.S. Ammiraju,Jetty S.S. Ammiraju,Jayson Talag,Ann Danowitz,Luis F. Rivera,Andrea R. Gschwend,Christos Noutsos,Cheng chieh Wu,Cheng chieh Wu,Shu-Min Kao,Shu-Min Kao,Jhih wun Zeng,Fu Jin Wei,Qiang Zhao,Qi Feng,Moaine El Baidouri,Marie-Christine Carpentier,Eric Lasserre,Richard Cooke,Daniel da Rosa Farias,Luciano Carlos da Maia,Railson Schreinert dos Santos,Kevin G. Nyberg,Kenneth L. McNally,Ramil Mauleon,Nickolai Alexandrov,Jeremy Schmutz,Dave Flowers,Chuanzhu Fan,Detlef Weigel,Kshirod K. Jena,Thomas Wicker,Mingsheng Chen,Bin Han,Robert J Henry,Yue-Ie C. Hsing,Nori Kurata,Antonio Costa de Oliveira,Olivier Panaud,Scott A. Jackson,Carlos A. Machado,Michael J. Sanderson,Manyuan Long,Doreen Ware,Doreen Ware,Rod A. Wing,Rod A. Wing +75 more
TL;DR: This study resolves controversial areas of the Oryza phylogeny, showing a complex history of introgression among different chromosomes in the young ‘AA’ subclade containing the two domesticated species and announcing many new haplotypes of potential use for future crop protection.
Journal ArticleDOI
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Muhua Wang,Yeisoo Yu,Georg Haberer,Pradeep Reddy Marri,Chuanzhu Fan,Jose Luis Goicoechea,Andrea Zuccolo,Xiang Song,Dave Kudrna,Jetty S.S. Ammiraju,Rosa Maria Cossu,Carlos Eduardo Maldonado,Jinfeng Chen,Seunghee Lee,Nick Sisneros,Kristi de Baynast,Wolfgang Golser,Marina Wissotski,Woojin Kim,Paul J. Sanchez,Marie-Noelle Ndjiondjop,Kayode Sanni,Manyuan Long,Judith Carney,Olivier Panaud,Thomas Wicker,Carlos A. Machado,Mingsheng Chen,Klaus F. X. Mayer,Steve Rounsley,Rod A. Wing +30 more
TL;DR: Evidence for artificial selection at a genome-wide scale, as well as with a set of O. glaberrima genes orthologous to O. sativa genes that are known to be associated with domestication, is detected, indicating convergent yet independent selection of a common set of genes during two geographically and culturally distinct domestication processes.
Journal ArticleDOI
LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia
Rik Op den Camp,Arend Streng,Stéphane De Mita,Qingqin Cao,Elisa Polone,Elisa Polone,Wei Liu,Wei Liu,Jetty S.S. Ammiraju,Dave Kudrna,Rod A. Wing,Andreas Untergasser,Ton Bisseling,Ton Bisseling,René Geurts +14 more
TL;DR: It is shown that in Parasponia a single Nod factor–like receptor is indispensable for both symbiotic interactions, and concluded that the Nod factors perception mechanism also is recruited from the widespread endomycorrhizal symbiosis.