L
Lidia Nascimento
Researcher at Cold Spring Harbor Laboratory
Publications - 10
Citations - 8092
Lidia Nascimento is an academic researcher from Cold Spring Harbor Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 9, co-authored 10 publications receiving 7546 citations.
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Journal ArticleDOI
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Patrick S. Schnable,Doreen Ware,Robert S. Fulton,Joshua C. Stein,Fusheng Wei,Shiran Pasternak,Chengzhi Liang,Jianwei Zhang,Lucinda Fulton,Tina Graves,Patrick Minx,Amy Denise Reily,Laura Courtney,Scott Kruchowski,Chad Tomlinson,Cindy Strong,Kim D. Delehaunty,Catrina Fronick,Bill Courtney,Susan M. Rock,Eddie Belter,Feiyu Du,Kyung Kim,Rachel Abbott,Marc Cotton,Andrew Levy,Pamela Marchetto,Kerri Ochoa,Stephanie M. Jackson,Barbara Gillam,Weizu Chen,Le Yan,Jamey Higginbotham,Marco Cardenas,Jason Waligorski,Elizabeth Applebaum,Lindsey Phelps,Jason Falcone,Krishna L. Kanchi,T. K. Thane,Adam Scimone,Nay Thane,Jessica Henke,Thomas J. Wang,Jessica Ruppert,Neha Shah,Kelsi Rotter,Jennifer S. Hodges,Elizabeth Ingenthron,Matt Cordes,Sara Kohlberg,Jennifer Sgro,Brandon Delgado,Kelly Mead,Asif T. Chinwalla,Shawn Leonard,Kevin Crouse,Kristi Collura,Dave Kudrna,Jennifer Currie,Ruifeng He,Angelina Angelova,Shanmugam Rajasekar,Teri Mueller,Rene Lomeli,Gabriel Scara,Ara Ko,Krista Delaney,Marina Wissotski,Georgina Lopez,David Campos,Michele Braidotti,Elizabeth Ashley,Wolfgang Golser,Hyeran Kim,Seunghee Lee,Jinke Lin,Zeljko Dujmic,Woojin Kim,Jayson Talag,Andrea Zuccolo,Chuanzhu Fan,Aswathy Sebastian,Melissa Kramer,Lori Spiegel,Lidia Nascimento,Theresa Zutavern,Beth Miller,Claude Ambroise,Stephanie Muller,William Spooner,Apurva Narechania,Liya Ren,Sharon Wei,Sunita Kumari,Ben Faga,Michael J. Levy,Linda McMahan,Peter Van Buren,Matthew W. Vaughn,Kai Ying,Cheng Ting Yeh,Scott J. Emrich,Scott J. Emrich,Yi Jia,Ananth Kalyanaraman,Ananth Kalyanaraman,An-Ping Hsia,W. Brad Barbazuk,Regina S. Baucom,Thomas P. Brutnell,Nicholas C. Carpita,Cristian Chaparro,Jer Ming Chia,Jean-Marc Deragon,James C. Estill,Yan Fu,Jeffrey A. Jeddeloh,Yujun Han,Hye-Ran Lee,Pinghua Li,Damon Lisch,Sanzhen Liu,Zhijie Liu,Dawn H. Nagel,Maureen C. McCann,Phillip SanMiguel,Alan M. Myers,Dan Nettleton,John D. Nguyen,Bryan W. Penning,Lalit Ponnala,Kevin L. Schneider,David C. Schwartz,Anupma Sharma,Carol Soderlund,Nathan M. Springer,Qi Sun,Hao Wang,Michael S. Waterman,Richard P. Westerman,Thomas K. Wolfgruber,Lixing Yang,Yeisoo Yu,Lifang Zhang,Shiguo Zhou,Qihui Zhu,Jeffrey L. Bennetzen,R. Kelly Dawe,Jiming Jiang,Ning Jiang,Gernot G. Presting,Susan R. Wessler,Srinivas Aluru,Srinivas Aluru,Robert A. Martienssen,Sandra W. Clifton,W. Richard McCombie,Rod A. Wing,Richard K. Wilson +159 more
TL;DR: The sequence of the maize genome reveals it to be the most complex genome known to date and the correlation of methylation-poor regions with Mu transposon insertions and recombination and how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state is reported.
Journal ArticleDOI
The map-based sequence of the rice genome
Takashi Matsumoto,Jianzhong Wu,Hiroyuki Kanamori,Yuichi Katayose,Masaki Fujisawa,Nobukazu Namiki,Hiroshi Mizuno,Kimiko Yamamoto,Baltazar A. Antonio,Tomoya Baba,Katsumi Sakata,Yoshiaki Nagamura,Hiroyoshi Aoki,Koji Arikawa,Kohei Arita,Takahito Bito,Yoshino Chiden,Nahoko Fujitsuka,Rie Fukunaka,Masao Hamada,Chizuko Harada,Akiko Hayashi,Saori Hijishita,Mikiko Honda,Satomi Hosokawa,Yoko Ichikawa,Atsuko Idonuma,Masumi Iijima,Michiko Ikeda,Maiko Ikeno,Kazue Ito,Sachie Ito,Tomoko Ito,Yuichi Ito,Yukiyo Ito,Aki Iwabuchi,Kozue Kamiya,Wataru Karasawa,Kanako Kurita,Satoshi Katagiri,Ari Kikuta,Harumi Kobayashi,Noriko Kobayashi,Kayo Machita,Tomoko Maehara,Masatoshi Masukawa,Tatsumi Mizubayashi,Yoshiyuki Mukai,Hideki Nagasaki,Yuko Nagata,Shinji Naito,Marina Nakashima,Yuko Nakama,Yumi Nakamichi,Mari Nakamura,Ayano Meguro,Manami Negishi,Isamu Ohta,Tomoya Ohta,Masako Okamoto,Nozomi Ono,Shoko Saji,Miyuki Sakaguchi,Kumiko Sakai,Michie Shibata,Takanori Shimokawa,Jianyu Song,Yuka Takazaki,Kimihiro Terasawa,Mika Tsugane,Kumiko Tsuji,Shigenori Ueda,Kazunori Waki,Harumi Yamagata,Mayu Yamamoto,Shinichi Yamamoto,Hiroko Yamane,Shoji Yoshiki,Rie Yoshihara,Kazuko Yukawa,Huisun Zhong,Masahiro Yano,Takuji Sasaki,Qiaoping Yuan,Shu Ouyang,Jia Liu,Kristine Jones,Kristen Gansberger,Kelly Moffat,Jessica Hill,Jayati Bera,Douglas Fadrosh,Shaohua Jin,Shivani Johri,Mary Kim,Larry Overton,Matthew Reardon,Tamara Tsitrin,Hue Vuong,Bruce Weaver,Anne Ciecko,Luke J. Tallon,Jacqueline Jackson,Grace Pai,Susan Van Aken,T. Utterback,Steve Reidmuller,Tamara Feldblyum,Joseph Hsiao,Victoria Zismann,Stacey E. Iobst,Aymeric R. De Vazeille,C. Robin Buell,Kai Ying,Ying Li,Tingting Lu,Y. Huang,Qiang Zhao,Qi Feng,Lei Zhang,Jingjie Zhu,Qijun Weng,Jie Mu,Yiqi Lu,Danlin Fan,Yilei Liu,Jianping Guan,Yujun Zhang,Shuliang Yu,Xiaohui Liu,Yu Zhang,Guofan Hong,Bin Han,Nathalie Choisne,Nadia Demange,Gisela Orjeda,Sylvie Samain,Laurence Cattolico,Eric Pelletier,Arnaud Couloux,Béatrice Segurens,Patrick Wincker,Angélique D'Hont,Claude Scarpelli,Jean Weissenbach,Marcel Salanoubat,Francis Quetier,Yeisoo Yu,Hyeran Kim,Teri Rambo,Jennifer Currie,Kristi Collura,Meizhong Luo,Tae-Jin Yang,Jetty S.S. Ammiraju,Friedrich Engler,Carol Soderlund,Rod A. Wing,Lance E. Palmer,Melissa De La Bastide,Lori Spiegel,Lidia Nascimento,Theresa Zutavern,A. O'Shaughnessy,Sujit Dike,Neilay Dedhia,R. Preston,Vivekanand Balija,W. Richard McCombie,Teh Yuan Chow,Hong-Hwa Chen,Mei-Chu Chung,Ching San Chen,J. F. Shaw,Hong Pang Wu,Kwang-Jen Hsiao,Ya Ting Chao,Mu Kuei Chu,Chia Hsiung Cheng,Ai Ling Hour,Pei Fang Lee,Shu Jen Lin,Yao-Cheng Lin,John Yu Liou,Shu Mei Liu,Yue-Ie C. Hsing,Saurabh Raghuvanshi,Amitabh Mohanty,Arvind K. Bharti,Arvind K. Bharti,Anupama Gaur,Vipin Gupta,Dibyendu Kumar,Vydianathan Ravi,Shubha Vij,Anita Kapur,Parul Khurana,Paramjit Khurana,Jitendra P. Khurana,Akhilesh K. Tyagi,Kishor Gaikwad,Alok Singh,Vivek Dalal,Subodh K. Srivastava,Anupam Dixit,Ajit K. Pal,Irfan Ahmad Ghazi,Mahavir Yadav,A. Pandit,Atul Bhargava,K. Sureshbabu,Kamlesh Batra,Tilak Raj Sharma,Trilochan Mohapatra,Nagendra K. Singh,Joachim Messing,Amy Bronzino Nelson,Galina Fuks,Steve Kavchok,Gladys Keizer,Eric Linton Victor Llaca,Rentao Song,Bahattin Tanyolac,Steve Young,Kim Yul Ho,Jang Ho Hahn,G. Sangsakoo,Apichart Vanavichit,Luiz Anderson Teixeira de Mattos,Paulo Dejalma Zimmer,Gaspar Malone,Odir Antônio Dellagostin,Antonio Costa de Oliveira,Michael W. Bevan,Ian Bancroft,Patrick Minx,Holly Cordum,Richard K. Wilson,Zhukuan Cheng,Weiwei Jin,Jiming Jiang,Sally A. Leong,Hisakazu Iwama,Takashi Gojobori,Takeshi Itoh,Takeshi Itoh,Yoshihito Niimura,Yasuyuki Fujii,Takuya Habara,Hiroaki Sakai,Hiroaki Sakai,Yoshiharu Sato,Gregory Wilson,Kiran Kumar,Susan R. McCouch,Nikoleta Juretic,Douglas R. Hoen,Stephen I. Wright,Richard Bruskiewich,Thomas E. Bureau,Akio Miyao,Hirohiko Hirochika,Tomotaro Nishikawa,Koh Ichi Kadowaki,Masahiro Sugiura,Benjamin Burr +265 more
TL;DR: A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Journal ArticleDOI
In-depth view of structure, activity, and evolution of rice chromosome 10
Yeisoo Yu,Teri Rambo,Jennifer Currie,Christopher A. Saski,H. R. Kim,Kristi Collura,S. Thompson,J. Simmons,Tae-Jin Yang,G. Nah,Ami Patel,S. Thurmond,David C Henry,R. Oates,Michael Palmer,Gina L Pries,J. Gibson,H. Anderson,M. Paradkar,L. Crane,J. Dale,M. B. Carver,Todd C. Wood,David Frisch,F. Engler,F. Engler,Carol Soderlund,Carol Soderlund,Lance E. Palmer,L. Tetylman,Lidia Nascimento,M. de la Bastide,Lori Spiegel,Doreen Ware,A. O'Shaughnessy,Sujit Dike,Neilay Dedhia,R. Preston,E. Huang,K. Ferraro,K. Kuit,B. Miller,Theresa Zutavern,F. Katzenberger,Stephanie Muller,Vivekanand Balija,Robert A. Martienssen,Lincoln Stein,Patrick Minx,David W. Johnson,Holly Cordum,Elaine R. Mardis,Zhukuan Cheng,Jiming Jiang,Richard K. Wilson,W. R. McCombie,Rod A. Wing,Q. Yuan,Q. Yuan,S. Ouyang,S. Ouyang,Jaime Liu,Jaime Liu,K. M. Jones,K. M. Jones,K. Gansberger,K. Gansberger,K. Moffat,K. Moffat,J. Hill,J. Hill,T. Tsitrin,T. Tsitrin,L. Overton,L. Overton,J. Bera,J. Bera,M. Kim,M. Kim,Sheng Chih Jin,Sheng Chih Jin,L. Tallon,L. Tallon,A. Ciecko,A. Ciecko,G. Pai,G. Pai,S. van Aken,S. van Aken,T. Utterback,T. Utterback,S. Reidmuller,S. Reidmuller,J. Bormann,J. Bormann,T. Feldblyum,T. Feldblyum,J. Hsiao,J. Hsiao,V. Zismann,V. Zismann,S. Blunt,S. Blunt,A. de Vazeilles,A. de Vazeilles,T. Shaffer,T. Shaffer,H. Koo,H. Koo,B. Suh,B. Suh,Q. Yang,Q. Yang,B. Haas,B. Haas,J. Peterson,J. Peterson,Mihaela Pertea,Mihaela Pertea,N. Volfovsky,N. Volfovsky,N. Volfovsky,J. Wortman,J. Wortman,O. White,O. White,Steven L. Salzberg,Steven L. Salzberg,Steven L. Salzberg,Claire M. Fraser,Claire M. Fraser,C. Robin Buell,Joachim Messing,Rentao Song,Galina Fuks,Victor Llaca,S. Kovchak,S. Young,John E. Bowers,Andrew H. Paterson,M. A. Johns,L. Mao,H. Pan,Ralph A. Dean +143 more
TL;DR: In this article, the authors report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes and multiple insertions from organellar genomes were detected.
Journal ArticleDOI
Maize genome sequencing by methylation filtration.
Lance E. Palmer,Pablo D. Rabinowicz,A. O'Shaughnessy,Vivekanand Balija,Lidia Nascimento,Sujit Dike,Melissa De La Bastide,Robert A. Martienssen,W. Richard McCombie +8 more
TL;DR: Comparison with the rice genome reveals that methylation filtration results in a more comprehensive representation of maize genes than those that result from expressed sequence tags or transposon insertion sites sequences.
Journal ArticleDOI
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
Nathalie Choisne,Nadia Demange,Gisela Orjeda,Sylvie Samain,Angélique D'Hont,Laurence Cattolico,Eric Pelletier,Arnaud Couloux,Béatrice Segurens,Patrick Wincker,Claude Scarpelli,Jean Weissenbach,Marcel Salanoubat,Nagendra K. Singh,Trilochan Mohapatra,Tilak Raj Sharma,Kishor Gaikwad,Alok Singh,Vivek Dalal,Subodh K. Srivastava,Anupam Dixit,Ajit K. Pal,Irfan Ahmad Ghazi,Mahavir Yadav,Awadhesh Pandit,Ashutosh Bhargava,K. Sureshbabu,Rekha Dixit,Harvinder Singh,Suresh C. Swain,Sumita Pal,M. Ragiba,Pradeep K. Singh,Vibha Singhal,Sangeeta D. Mendiratta,Kamlesh Batra,Saurabh Raghuvanshi,Amitabh Mohanty,Arvind K. Bharti,Anupama Gaur,Vikrant Gupta,Dibyendu Kumar,Ravi Vydianathan,Shuba Vij,Anita Kapur,Parul Khurana,Sulabha Sharma,Paramjit Khurana,Jitendra P. Khurana,Akhilesh K. Tyagi,Qiaoping Yuan,Shu Ouyang,Jia Liu,Wei Zhu,Aihui Wang,Haining Lin,John P. Hamilton,Brian J. Haas,Jennifer R. Wortman,Kristine Jones,Mary Kim,Larry Overton,Tamara Tsitrin,Douglas Fadrosh,Jayati Bera,Bruce Weaver,Shaohua Jin,Shivani Johri,Matt Reardon,Hue Vuong,Luke J. Tallon,Susan Van Aken,Matthew R. Lewis,Teresa Utterback,Tamara Feldblyum,Victoria Zismann,Stacey E. Iobst,Joseph Hsiao,Aymeric R. De Vazeille,Steven L. Salzberg,Owen White,Claire M. Fraser,C. Robin Buell,Yeisoo Yu,Teri Rambo,Jennifer Currie,Kristi Collura,Hyeran Kim,Diana Stum,Wenming Wang,Dave Kudrna,Christopher Mueller,Rod A. Wing,Melissa Kramer,Lori Spiegel,Lidia Nascimento,R. Preston,Theresa Zutavern,Joachim Messing +98 more
TL;DR: Based on syntenic alignments of these chromosomes, rice chromosome 11 and 12 do not appear to have resulted from a single whole-genome duplication event as previously suggested.