Y
Yun Li
Researcher at Auburn University
Publications - 38
Citations - 1139
Yun Li is an academic researcher from Auburn University. The author has contributed to research in topics: Catfish & Ictalurus. The author has an hindex of 17, co-authored 33 publications receiving 862 citations. Previous affiliations of Yun Li include Chinese Academy of Fishery Sciences & University of Alabama.
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Journal ArticleDOI
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.
Zhanjiang Liu,Shikai Liu,Jun Yao,Lisui Bao,Jiaren Zhang,Yun Li,Chen Jiang,Luyang Sun,Ruijia Wang,Yu Zhang,Tao Zhou,Qifan Zeng,Qiang Fu,Sen Gao,Ning Li,Sergey Koren,Yanliang Jiang,Aleksey V. Zimin,Peng Xu,Adam M. Phillippy,Xin Geng,Lin Song,Fanyue Sun,Chao Li,Xiaozhu Wang,Ailu Chen,Yulin Jin,Zihao Yuan,Yujia Yang,Suxu Tan,Eric Peatman,Jianguo Lu,Zhenkui Qin,Rex A. Dunham,Zhaoxia Li,Tad S. Sonstegard,Jianbin Feng,Roy G. Danzmann,Steven Schroeder,Brian E. Scheffler,Mary V. Duke,Linda L. Ballard,Huseyin Kucuktas,Ludmilla Kaltenboeck,Haixia Liu,Jonathan W. Armbruster,Yangjie Xie,Mona L. Kirby,Yi Tian,Mary Elizabeth Flanagan,Weijie Mu,Geoffrey C. Waldbieser +51 more
TL;DR: A high-quality reference genome sequence of channel catfish is reported, providing evidence that lack of secretory calcium-binding phosphoproteins accounts for the evolutionary loss of scales in catfish and demonstrates the power of comparative subtraction of candidate genes for traits of structural significance.
Journal ArticleDOI
Development of the catfish 250K SNP array for genome-wide association studies
Shikai Liu,Luyang Sun,Yun Li,Fanyue Sun,Yanliang Jiang,Yu Zhang,Jiaren Zhang,Jianbin Feng,Ludmilla Kaltenboeck,Huseyin Kucuktas,Zhanjiang Liu +10 more
TL;DR: This work developed a catfish 250K SNP array using Affymetrix Axiom genotyping technology, which is the first high-density SNP array for catfish and should be a valuable resource for genome-wide association studies (GWAS), fine QTL mapping, high- density linkage map construction, haplotype analysis, and whole genome-based selection.
Journal ArticleDOI
The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish
Lisui Bao,Changxu Tian,Shikai Liu,Yu Zhang,Ahmed Elaswad,Zihao Yuan,Karim Khalil,Fanyue Sun,Yujia Yang,Tao Zhou,Ning Li,Suxu Tan,Qifan Zeng,Yang Liu,Yueru Li,Yun Li,Dongya Gao,Rex A. Dunham,Kenneth B. Davis,Geoffrey C. Waldbieser,Zhanjiang Liu +20 more
TL;DR: Comparative analyses suggest that sex-specific isoform expression through alternative splicing may underlie sex determination processes in the channel catfish, and BCAR1 is identified as a potential sex determination gene.
Journal ArticleDOI
Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish
Yun Li,Shikai Liu,Zhenkui Qin,Geoff Waldbieser,Ruijia Wang,Luyang Sun,Lisui Bao,Roy G. Danzmann,Rex A. Dunham,Zhanjiang Liu +9 more
TL;DR: The integrated map provides a valuable tool for validating and improving the catfish whole-genome assembly and facilitates fine-scale QTL mapping and positional cloning of genes responsible for economically important traits.
Journal ArticleDOI
Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence.
Qifan Zeng,Qiang Fu,Yun Li,Geoff Waldbieser,Brian G. Bosworth,Shikai Liu,Yujia Yang,Lisui Bao,Zihao Yuan,Ning Li,Zhanjiang Liu +10 more
TL;DR: A high-density SNP array with 690,662 unique SNPs (herein 690 K array) that were relatively evenly distributed across the entire genome, and covered 98.6% of the reference genome sequence is developed.