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Yujia Yang
Researcher at Auburn University
Publications - 42
Citations - 1170
Yujia Yang is an academic researcher from Auburn University. The author has contributed to research in topics: Catfish & Gene. The author has an hindex of 14, co-authored 32 publications receiving 757 citations.
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Journal ArticleDOI
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.
Zhanjiang Liu,Shikai Liu,Jun Yao,Lisui Bao,Jiaren Zhang,Yun Li,Chen Jiang,Luyang Sun,Ruijia Wang,Yu Zhang,Tao Zhou,Qifan Zeng,Qiang Fu,Sen Gao,Ning Li,Sergey Koren,Yanliang Jiang,Aleksey V. Zimin,Peng Xu,Adam M. Phillippy,Xin Geng,Lin Song,Fanyue Sun,Chao Li,Xiaozhu Wang,Ailu Chen,Yulin Jin,Zihao Yuan,Yujia Yang,Suxu Tan,Eric Peatman,Jianguo Lu,Zhenkui Qin,Rex A. Dunham,Zhaoxia Li,Tad S. Sonstegard,Jianbin Feng,Roy G. Danzmann,Steven Schroeder,Brian E. Scheffler,Mary V. Duke,Linda L. Ballard,Huseyin Kucuktas,Ludmilla Kaltenboeck,Haixia Liu,Jonathan W. Armbruster,Yangjie Xie,Mona L. Kirby,Yi Tian,Mary Elizabeth Flanagan,Weijie Mu,Geoffrey C. Waldbieser +51 more
TL;DR: A high-quality reference genome sequence of channel catfish is reported, providing evidence that lack of secretory calcium-binding phosphoproteins accounts for the evolutionary loss of scales in catfish and demonstrates the power of comparative subtraction of candidate genes for traits of structural significance.
Journal ArticleDOI
Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research
Hisham A. Abdelrahman,Mohamed ElHady,Acacia Alcivar-Warren,Standish K. Allen,Rafet Al-Tobasei,Lisui Bao,Ben Beck,Harvey D. Blackburn,Brian G. Bosworth,John Buchanan,Jesse A. Chappell,William H. Daniels,Sheng Dong,Rex A. Dunham,Evan Durland,Ahmed Elaswad,Marta Gomez-Chiarri,Kamal Gosh,Ximing Guo,Perry B. Hackett,Terry Hanson,Dennis Hedgecock,Tiffany S. Howard,Leigh Holland,Molly Jackson,Yulin Jin,Karim Khalil,Thomas D. Kocher,Timothy D. Leeds,Ning Li,Lauren Lindsey,Shikai Liu,Zhanjiang Liu,Kyle E. Martin,Romi Novriadi,Ramjie Odin,Yniv Palti,Eric Peatman,Dina A. Proestou,Guyu Qin,Benjamin J. Reading,Caird E. Rexroad,Steven B. Roberts,Mohamed Salem,Andrew J. Severin,Huitong Shi,Craig A. Shoemaker,Sheila Stiles,Suxu Tan,Kathy F.J. Tang,Wilawan Thongda,Terrence R. Tiersch,Joseph R. Tomasso,Wendy Tri Prabowo,Roger L. Vallejo,Hein van der Steen,Khoi Vo,Geoff Waldbieser,Han-Ping Wang,Xiaozhu Wang,Jianhai Xiang,Yujia Yang,Roger Yant,Zihao Yuan,Qifan Zeng,Tao Zhou +65 more
TL;DR: A general review of the current status, challenges and future research needs of aquaculture genomics, genetics, and breeding is provided, with a focus on major Aquaculture species in the United States: catfish, rainbow trout, Atlantic salmon, tilapia, striped bass, oysters, and shrimp.
Journal ArticleDOI
The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish
Lisui Bao,Changxu Tian,Shikai Liu,Yu Zhang,Ahmed Elaswad,Zihao Yuan,Karim Khalil,Fanyue Sun,Yujia Yang,Tao Zhou,Ning Li,Suxu Tan,Qifan Zeng,Yang Liu,Yueru Li,Yun Li,Dongya Gao,Rex A. Dunham,Kenneth B. Davis,Geoffrey C. Waldbieser,Zhanjiang Liu +20 more
TL;DR: Comparative analyses suggest that sex-specific isoform expression through alternative splicing may underlie sex determination processes in the channel catfish, and BCAR1 is identified as a potential sex determination gene.
Journal ArticleDOI
Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence.
Qifan Zeng,Qiang Fu,Yun Li,Geoff Waldbieser,Brian G. Bosworth,Shikai Liu,Yujia Yang,Lisui Bao,Zihao Yuan,Ning Li,Zhanjiang Liu +10 more
TL;DR: A high-density SNP array with 690,662 unique SNPs (herein 690 K array) that were relatively evenly distributed across the entire genome, and covered 98.6% of the reference genome sequence is developed.
Journal ArticleDOI
Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish
Xiaoxiao Zhong,Xiaozhu Wang,Tao Zhou,Yulin Jin,Suxu Tan,Chen Jiang,Xin Geng,Ning Li,Huitong Shi,Qifan Zeng,Yujia Yang,Zihao Yuan,Lisui Bao,Shikai Liu,Changxu Tian,Eric Peatman,Qi Li,Zhanjiang Liu +17 more
TL;DR: Comparative analysis indicated that most of the QTL at the species level, as analyzed by using the interspecific system, did not overlap with those identified from six strains of channel catfish, confirming the complexity of the genetic architecture of hypoxia tolerance in catfish.