G
Geoffrey C. Waldbieser
Researcher at Agricultural Research Service
Publications - 115
Citations - 4056
Geoffrey C. Waldbieser is an academic researcher from Agricultural Research Service. The author has contributed to research in topics: Catfish & Ictalurus. The author has an hindex of 35, co-authored 105 publications receiving 3421 citations. Previous affiliations of Geoffrey C. Waldbieser include United States Department of Agriculture.
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Journal ArticleDOI
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
Derek M. Bickhart,Benjamin D. Rosen,Sergey Koren,B.L. Sayre,Alex Hastie,Saki Chan,Joyce Lee,Ernest T. Lam,Ivan Liachko,Shawn T. Sullivan,Joshua N. Burton,Heather J. Huson,John C Nystrom,Christy M. Kelley,J.L. Hutchison,Yang Zhou,Yang Zhou,Jiajie Sun,Alessandra Crisà,F. Abel Ponce de León,John C. Schwartz,John A. Hammond,Geoffrey C. Waldbieser,Steven G. Schroeder,George E. Liu,Maitreya J. Dunham,Jay Shendure,Jay Shendure,Tad S. Sonstegard,Adam M. Phillippy,Curtis P. Van Tassell,Timothy P L Smith +31 more
TL;DR: This assembly represents a ∼400-fold improvement in continuity due to properly assembled gaps, compared to the previously published C. hircus assembly, and better resolves repetitive structures longer than 1 kb, representing the largest repeat family and immune gene complex yet produced for an individual of a ruminant species.
Journal ArticleDOI
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.
Zhanjiang Liu,Shikai Liu,Jun Yao,Lisui Bao,Jiaren Zhang,Yun Li,Chen Jiang,Luyang Sun,Ruijia Wang,Yu Zhang,Tao Zhou,Qifan Zeng,Qiang Fu,Sen Gao,Ning Li,Sergey Koren,Yanliang Jiang,Aleksey V. Zimin,Peng Xu,Adam M. Phillippy,Xin Geng,Lin Song,Fanyue Sun,Chao Li,Xiaozhu Wang,Ailu Chen,Yulin Jin,Zihao Yuan,Yujia Yang,Suxu Tan,Eric Peatman,Jianguo Lu,Zhenkui Qin,Rex A. Dunham,Zhaoxia Li,Tad S. Sonstegard,Jianbin Feng,Roy G. Danzmann,Steven Schroeder,Brian E. Scheffler,Mary V. Duke,Linda L. Ballard,Huseyin Kucuktas,Ludmilla Kaltenboeck,Haixia Liu,Jonathan W. Armbruster,Yangjie Xie,Mona L. Kirby,Yi Tian,Mary Elizabeth Flanagan,Weijie Mu,Geoffrey C. Waldbieser +51 more
TL;DR: A high-quality reference genome sequence of channel catfish is reported, providing evidence that lack of secretory calcium-binding phosphoproteins accounts for the evolutionary loss of scales in catfish and demonstrates the power of comparative subtraction of candidate genes for traits of structural significance.
Journal ArticleDOI
A Microsatellite-Based Genetic Linkage Map for Channel Catfish, Ictalurus punctatus
TL;DR: The discovery of microsatellite loci in channel catfish gene sequences or random clones and a genetic linkage map of the channel cat fish genome will increase the efficiency of selective breeding programs forChannel catfish.
Journal ArticleDOI
Activation of TLR3 and TLR5 in channel catfish exposed to virulent Edwardsiella ictaluri.
TL;DR: TLR5 was highly expressed in liver tissue, which may be due to macrophage aggregation during ESC infection, which suggests that toll-like receptors are an important component of the innate immune system of catfish.
Journal ArticleDOI
Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions.
Brian C. Small,Chris Murdock,A. Lelania Bilodeau-Bourgeois,Brian C. Peterson,Geoffrey C. Waldbieser +4 more
TL;DR: The results reveal the importance of providing comprehensive details of reference gene validation when publishing real-time PCR results, with this manuscript serving as a basic guideline for reference gene selection in channel catfish research.